View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_33 (Length: 377)
Name: NF1240_low_33
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_33 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 10525275 - 10524927
Alignment:
| Q |
7 |
gaagcaaaggtaagaattttacgagttttaatccaaaaagaattttaagctaaacgtatcatccttt-------------catacttatttcccttaagg |
93 |
Q |
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| T |
10525275 |
gaagaaaaagtaagaattttgcgagttttaatccaaaatgaattttaaactaaatgtatcatcctttgaaaactctcattcataattaattcccttaagg |
10525176 |
T |
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| Q |
94 |
atatcacttttcaataaaatctttagcatgatccaatcataagtcatacacaaagttctacaaacacatctacaattgaaattgaaagtaatagaaataa |
193 |
Q |
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| T |
10525175 |
ataacacttttcaataaaatctttagcatgatccaatcataagtcatacacaaagttctacaaacacatctacaattgaaa------gtaatagaaataa |
10525082 |
T |
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| Q |
194 |
aactcattattcgtttatctcattccacaatgtgcacatataccacactatctcttcgttggggaacgataccatctcaagttgaaacgagcactaaact |
293 |
Q |
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| T |
10525081 |
atcacattattcgtttatctcattccacaatgtgcacatataccacactatctctttgtttacgaatgataccatctcaagttactacaagcactaaatt |
10524982 |
T |
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| Q |
294 |
cataggctgcattatttcttcgttgaatcaaactgttatgatcttaaattactat |
348 |
Q |
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| T |
10524981 |
tataggctacattaattcttcgttgaaacaagtagttatgatcttaaattactat |
10524927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 19390036 - 19389942
Alignment:
| Q |
72 |
ttcatacttatttcccttaaggatatcacttttcaataaaatctttagcatgatccaatcataagtcatacacaaagttctacaaacacatctac |
166 |
Q |
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| T |
19390036 |
ttcatacttatatcccttaaggataacactttccaataaaatctttagcatgatccaatcacaagtcatagatgaagttctacaaacacatctac |
19389942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 13468217 - 13468164
Alignment:
| Q |
204 |
tcgtttatctcattccacaatgtgcacatataccacactatctcttcgttgggg |
257 |
Q |
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| T |
13468217 |
tcgtttatttccttccaccatgtgcacatagaccacattaactcttcgttgggg |
13468164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 50505 - 50560
Alignment:
| Q |
77 |
acttatttcccttaaggatatcacttttcaataaaatctttagcatgatccaatca |
132 |
Q |
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| T |
50505 |
acttatatcccttagggataacacttttcaataaaatgtttagcatgatccaatca |
50560 |
T |
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