View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_37 (Length: 350)
Name: NF1240_low_37
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 47812267 - 47812575
Alignment:
| Q |
30 |
ttatcctaaattatgaagaatttatctgtatttgagtgctgttttaaaatataaaagaatcttattttattatttgtgtcaagatcgacatctaattagt |
129 |
Q |
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| T |
47812267 |
ttatcctaaattatgaagaatttatctgtatttgagtgctgttttaaaatataaaagaatcttattttattatttgtgtcaagatcgacatctaattagt |
47812366 |
T |
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| Q |
130 |
taatgatcaagataaatttgaaaagaggatatcgttttttgctactggtctgaaaagaacagaacaagaaaaagggaaaattaagtcctaaggaaagtcc |
229 |
Q |
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| T |
47812367 |
taatgatcaagataaatttgaaaagaggatatcgttttttgctactggtctgaaaagaacagaacaagaaaaagggaaaattaagtcctaaggaaagtcc |
47812466 |
T |
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| Q |
230 |
ttcccgatacatatgctaacagaaggctactcaaacatggagtaggagcataaaaaatcttcatattatcctcattataagccgttcattgagtcctaag |
329 |
Q |
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| T |
47812467 |
ttcccgatacatatgctaacagaaggctactcaaacatggagtaggagcataaaaaatcttcatattatcctcattataagccgttcattgagtcctaag |
47812566 |
T |
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| Q |
330 |
gctaagaat |
338 |
Q |
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| T |
47812567 |
gctaagaat |
47812575 |
T |
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