View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_38 (Length: 350)
Name: NF1240_low_38
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 30 - 341
Target Start/End: Original strand, 47812267 - 47812578
Alignment:
| Q |
30 |
ttatcctaaattatgaagaatttatctgtatttgagtgctgttttaaaatataaaagaatcttattttattatttgtgtcaagatcgacatctaattagt |
129 |
Q |
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| T |
47812267 |
ttatcctaaattatgaagaatttatctgtatttgagtgctgttttaaaatataaaagaatcttattttattatttgtgtcaagatcgacatctaattagt |
47812366 |
T |
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| Q |
130 |
taatgatcaagataaatttgaaaagaggatatcgttttttgctactggtctgaaaagaacagaacaagaaaaagggaaaattaagtcctaaggaaagtcc |
229 |
Q |
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| T |
47812367 |
taatgatcaagataaatttgaaaagaggatatcgttttttgctactggtctgaaaagaacagaacaagaaaaagggaaaattaagtcctaaggaaagtcc |
47812466 |
T |
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| Q |
230 |
ttcccgatacatatgctaacagaaggctactcaaacatggagtaggagcataaaaaatcttcatattatcctcattataagccgttcattgagtcctaag |
329 |
Q |
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| T |
47812467 |
ttcccgatacatatgctaacagaaggctactcaaacatggagtaggagcataaaaaatcttcatattatcctcattataagccgttcattgagtcctaag |
47812566 |
T |
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| Q |
330 |
gctaagaataat |
341 |
Q |
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| T |
47812567 |
gctaagaataat |
47812578 |
T |
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