View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_42 (Length: 328)
Name: NF1240_low_42
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 178 - 328
Target Start/End: Original strand, 28442899 - 28443049
Alignment:
| Q |
178 |
ttttcaaaataagcaataaaagaaccattcatgtttgttacatcctaagacagatttattccctatgtgagaaattttaagttttacttaaggggggatt |
277 |
Q |
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| T |
28442899 |
ttttcaaaataagcaataaaagaaccattcatgtttgttacatcctaagacagatttattccctatgtgagaaattttaagttttacttaaggggggatt |
28442998 |
T |
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| Q |
278 |
ttccaagtgtcaatattattgattatttatttttcatttaataaacgtttt |
328 |
Q |
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| T |
28442999 |
ttccaagtgtcaatattattgattacttatttttcatttaataaacgtttt |
28443049 |
T |
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