View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_43 (Length: 327)

Name: NF1240_low_43
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_43
NF1240_low_43
[»] chr1 (5 HSPs)
chr1 (29-287)||(27252926-27253184)
chr1 (198-287)||(27293839-27293928)
chr1 (198-273)||(27426741-27426816)
chr1 (198-287)||(27405806-27405895)
chr1 (29-106)||(27293082-27293159)
[»] scaffold0417 (1 HSPs)
scaffold0417 (198-281)||(10431-10514)
[»] chr3 (1 HSPs)
chr3 (198-285)||(13356234-13356321)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 27252926 - 27253184
Alignment:
Q  29 aaaatacatgttcaaaaatttggtcacgtgaattacaaatcagagggtgtcaagactctgaatcacattcaatggagagagttatccactccatttgtgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  27252926 aaaatacatgttcaaaaatttggtcacgtgaattacaaatcagagggtgtcaaggctctgaatcacattcaatggagagagttatccactccatttatgt 27253025  T
Q  129 aaatcaaataaatccattatcatatctttcattaacaatcaatcaagttataaactccatcannnnnnnacctgttctactgtaatacccatggaatgca 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |       |||||||||||||||||||||||||||||||    
T  27253026 aaatcaaataaatccattatcatatctttcattaacaattaatcaagctataaactccataacttttttacctgttctactgtaatacccatggaatgca 27253125  T
Q  229 aagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgacgagcaacag 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27253126 aagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgatgagcaacag 27253184  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 27293839 - 27293928
Alignment:
Q  198 acctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgacgagcaacag 287  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27293839 acctgttctactgtaatacccatagaaagcaaagcagaagtaacttcacgaagtattggagaagcatcatcaaatgatgacgagcaacag 27293928  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 27426816 - 27426741
Alignment:
Q  198 acctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatg 273  Q
    ||||||||||| | ||| || |||||||| |||||||||| |||||||||||||||||| |||||| |||||||||    
T  27426816 acctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaatg 27426741  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 27405895 - 27405806
Alignment:
Q  198 acctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgacgagcaacag 287  Q
    ||||||||||| | ||| ||||||||||| |||||||||| |||||| ||||||| ||| | |||  ||||||||| ||| ||| |||||    
T  27405895 acctgttctacaggaatgcccatggaatgtaaagcagaagcaacttcgcgaagtactggggtagctgcatcaaatgctgatgaggaacag 27405806  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 27293082 - 27293159
Alignment:
Q  29 aaaatacatgttcaaaaatttggtcacgtgaattacaaatcagagggtgtcaagactctgaatcacattcaatggaga 106  Q
    |||||||  ||||| ||| |||||||||| ||||| |||||||||||||| ||| |||  ||| | ||||||||||||    
T  27293082 aaaatacgagttcagaaaattggtcacgtaaattagaaatcagagggtgtgaaggctcctaataatattcaatggaga 27293159  T

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Target: scaffold0417 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 10431 - 10514
Alignment:
Q  198 acctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgacgag 281  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  10431 acctgttctactggaattcccattgaatgtaaagcagaagtaacttcacgaagtattggggaagcaacatcaaatgctgacgag 10514  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 13356321 - 13356234
Alignment:
Q  198 acctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgacgagcaac 285  Q
    ||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||  ||||||||||    
T  13356321 acctgttctactggaatgcccatagaatgcaaagcataagtaacttcacgaagtattggggaagcaacatcaaatgcggacgagcaac 13356234  T

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