View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_45 (Length: 319)

Name: NF1240_low_45
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_45
NF1240_low_45
[»] chr4 (16 HSPs)
chr4 (5-222)||(12121589-12121807)
chr4 (1-224)||(1508133-1508357)
chr4 (1-222)||(1513536-1513758)
chr4 (1-222)||(1489493-1489715)
chr4 (1-222)||(1537899-1538121)
chr4 (40-222)||(1534123-1534306)
chr4 (4-138)||(1517716-1517850)
chr4 (4-138)||(1496136-1496270)
chr4 (92-222)||(1552902-1553033)
chr4 (1-144)||(558243-558386)
chr4 (92-222)||(55505237-55505368)
chr4 (4-155)||(1548624-1548775)
chr4 (161-210)||(553384-553434)
chr4 (162-222)||(546819-546880)
chr4 (159-210)||(644734-644786)
chr4 (1-41)||(1530097-1530137)
[»] chr2 (2 HSPs)
chr2 (4-206)||(44575643-44575853)
chr2 (92-222)||(45245217-45245348)
[»] chr3 (2 HSPs)
chr3 (95-222)||(51113913-51114041)
chr3 (92-221)||(514861-514991)
[»] chr6 (2 HSPs)
chr6 (140-210)||(28934933-28935004)
chr6 (170-222)||(6415880-6415933)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 12121807 - 12121589
Alignment:
5 tttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
12121807 tttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgat 12121708  T
105 ggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
12121707 ggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgct 12121608  T
204 tcactcccatctctgtgac 222  Q
    |||||||||||||||||||    
12121607 tcactcccatctctgtgac 12121589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1508357 - 1508133
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaa 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  | | | |||||||||||| |  |||| |||| |  ||||||||    
1508357 cacttttagaatactagcaaacaatgcatccttgacgtgataagtgttccatctctctatcgctgaaacgataaccaagaggaattgttatttttctcaa 1508258  T
101 tgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca 199  Q
     ||||||||||||||||||||||||||||||||||||| | | || | | ||| ||||||||||| |||||||||||||||||||||  |||||| | ||    
1508257 cgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcgca 1508158  T
200 tgcttcactcccatctctgtgactg 224  Q
    ||||||||||||||||| |||||||    
1508157 tgcttcactcccatctcggtgactg 1508133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1513758 - 1513536
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaa 100  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||| | ||||| |||||| ||  |||| |   |||||||| ||    
1513758 cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa 1513659  T
101 tgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca 199  Q
     ||||||||||||||||||||||||||||||||||||| || ||||| |  |||||||||||||| ||||||||| |||||||||||  |||||| ||||    
1513658 cgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcaca 1513559  T
200 tgcttcactcccatctctgtgac 222  Q
     ||||||||||||||||||||||    
1513558 agcttcactcccatctctgtgac 1513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1489715 - 1489493
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaa 100  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||| | ||||  |||||  ||  |||||||  |||||||| ||    
1489715 cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaa 1489616  T
101 tgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca 199  Q
     ||||||||||||||||||||||||||||||||||||  ||||||||||  |||   |||||||| ||||||||||||||||| |||  |||||| ||||    
1489615 cgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttttctagcaca 1489516  T
200 tgcttcactcccatctctgtgac 222  Q
    |||||||||||| ||||||||||    
1489515 tgcttcactcccttctctgtgac 1489493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1538121 - 1537899
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaa 100  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||  ||| | |||||||||||| ||  |||| ||| |||||||| ||    
1538121 cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa 1538022  T
101 tgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca 199  Q
     ||||||||||||||||||||||||| ||||||||||  || |||||||| |||   |||||||| ||||||||||||||| |||||  |||||| ||||    
1538021 cgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcaca 1537922  T
200 tgcttcactcccatctctgtgac 222  Q
    | |||||||||| ||| ||||||    
1537921 tacttcactcccttctgtgtgac 1537899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 1534306 - 1534123
Alignment:
40 ataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaatgatggccttgaaaatatcaatgaggcaagaacatcaca 139  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||| |  ||| |||||||||||||||| |||||||||||||||||||||||||     
1534306 ataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttgacaatatcaatgaggcaagaacatcact 1534207  T
140 atgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgac 222  Q
     | ||| | |  ||||||| ||||||||||||||  ||||||||  || || |||||||||||||| |||||| ||||||||||    
1534206 tttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactcccttctctgtgac 1534123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 1517850 - 1517716
Alignment:
4 ttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaatga 103  Q
    |||||||||||||| ||||| | || ||||| ||  |||| |||||||||||||||| | ||||||||||| |||| |||||||| |  ||| |||||||    
1517850 ttttagaatactagtaaacattacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatga 1517751  T
104 tggccttgaaaatatcaatgaggcaagaacatcac 138  Q
    ||||||||| |||||||||||| ||||||||||||    
1517750 tggccttgacaatatcaatgagacaagaacatcac 1517716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 1496270 - 1496136
Alignment:
4 ttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaatga 103  Q
    ||||||| |||||| ||||| | || ||||| ||  ||||||||||||||||||||| ||||||  |||||||||  |||||||| |  ||| |||| ||    
1496270 ttttagattactagtaaacattacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaacga 1496171  T
104 tggccttgaaaatatcaatgaggcaagaacatcac 138  Q
    ||||||||| |||||||||||| ||||||||||||    
1496170 tggccttgacaatatcaatgagacaagaacatcac 1496136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 1553033 - 1552902
Alignment:
92 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgc-actt 190  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||  || ||||| |||||||  |||||||| |||||||||||||||   || | ||    
1553033 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagcaattt 1552934  T
191 tctaccacatgcttcactcccatctctgtgac 222  Q
    ||| | ||||||||||||||| |||| |||||    
1552933 tctccgacatgcttcactcccttctcggtgac 1552902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 558243 - 558386
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaa 100  Q
    |||||||||| ||||||||  ||||||| |||| |||  ||||||| ||||||||  ||| | |||||||| || |||  |||||||| |||||||||||    
558243 cacttttagattactagcagccaatgcatcctttacgcaataagagctccatctctctgtcgctgaaacgacaaggatatggagttgttaactttctcaa 558342  T
101 tgatggccttgaaaatatcaatgaggcaagaacatcacaatgca 144  Q
    |||||| ||||||| ||| |||||| ||||| ||| || |||||    
558343 tgatggtcttgaaagtattaatgagacaagatcatgaccatgca 558386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 55505368 - 55505237
Alignment:
92 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctt 190  Q
    |||||||||||||||||||||||||| || |||| ||| ||||  |  |||||||| |  ||||   ||||| | |||||||||||||||||||||  ||    
55505368 ctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 55505269  T
191 tctaccacatgcttcactcccatctctgtgac 222  Q
    |||| ||| || ||||||||| ||||||||||    
55505268 tctaacacgtgtttcactcccttctctgtgac 55505237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 1548775 - 1548624
Alignment:
4 ttttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttctcaatga 103  Q
    |||| ||||||||||||||||  || |||||| | || ||||||||||||||  |||   | ||| || || || | |||||||| | ||||||||||||    
1548775 ttttcgaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatga 1548676  T
104 tggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaa 155  Q
    ||| |||||||||| |||||| || | |||||||  ||||| ||||| ||||    
1548675 tggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaa 1548624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 553384 - 553434
Alignment:
161 caaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcc 210  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||||||    
553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcc 553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 546819 - 546880
Alignment:
162 aaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcccatctctgtgac 222  Q
    |||| |||||||||||||| ||||||  |||||| |||||| ||||||||| ||||||||||    
546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgac 546880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 644734 - 644786
Alignment:
159 ttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcc 210  Q
    ||||||||||||||||| |||||||||||  |||| |||||||| ||||||||    
644734 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcc 644786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1530137 - 1530097
Alignment:
1 cacttttagaatactagcaaacaatgcaaccttgacgtgat 41  Q
    ||||||||||||||||| |||||||||| ||||||| ||||    
1530137 cacttttagaatactaggaaacaatgcatccttgacatgat 1530097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 44575853 - 44575643
Alignment:
4 ttttagaatactagcaaacaatgcaacc-------ttgacgtgataagagttccatctccttgttgttgaaacgataacgatcaggagttgtaaactttc 96  Q
    |||| |||||||||||||||||||| ||       |||||| ||||||||||||||||| | ||   |||||  || |||||  ||| |||| |||||||    
44575853 ttttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcactgaaatcatcacgatatggaattgttaactttc 44575754  T
97 tcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctac 195  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||||| | |  ||||| | |||||| || ||||||  ||||||||||  |||||||    
44575753 tcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctctcggttgtgtgcagttttctac 44575654  T
196 cacatgcttca 206  Q
    |||||| ||||    
44575653 cacatgattca 44575643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 45245348 - 45245217
Alignment:
92 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt 191  Q
    |||| |||| |||||||||||||||| ||  ||| ||| ||||| |  |||||||||||  || |   |||||| ||||||| | ||||||||||| |||    
45245348 ctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattt 45245249  T
192 -ctaccacatgcttcactcccatctctgtgac 222  Q
     |||||||||| ||||||||| | ||||||||    
45245248 tctaccacatgtttcactcccttatctgtgac 45245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 51114041 - 51113913
Alignment:
95 tctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttct 193  Q
    |||||||||||||||||||||||||| |||||||| || || |  |||||||| || ||||   || ||||  ||||||||||||| ||||||  |||||    
51114041 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttct 51113942  T
194 accacatgcttcactcccatctctgtgac 222  Q
    |||||||||||||||||| ||||||||||    
51113941 accacatgcttcactcccttctctgtgac 51113913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 514991 - 514861
Alignment:
92 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt 191  Q
    |||||||||||||||||||||||||| || || ||||| ||||| | ||||||||| |  ||||  | | |||| ||||||||| ||| ||||||| |||    
514991 ctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagttt 514892  T
192 ct-accacatgcttcactcccatctctgtga 221  Q
     | |||||||||||||||||| |||||||||    
514891 ttcaccacatgcttcactcccgtctctgtga 514861  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 28934933 - 28935004
Alignment:
140 atgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgc-actttctaccacatgcttcactcc 210  Q
    |||||||| || |||||  | ||||| |||||||||||||||||||| | ||||||||||||||||||||||    
28934933 atgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 6415880 - 6415933
Alignment:
170 ctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgac 222  Q
    |||||||||||||||||| || ||||||||||| ||||||||||  ||||||||    
6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgac 6415933  T

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