View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_46 (Length: 318)
Name: NF1240_low_46
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 15284528 - 15284251
Alignment:
| Q |
12 |
agctgttgccgcaccaccggaatatttgaccggaaactattcaactcaacttatggccaccttggaatcaggagtaagttttggttccggtgagtatttc |
111 |
Q |
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| T |
15284528 |
agctgttgccgcaccaccggaatatttgaccggaaactattcaactcagcttatggccaccttggaatcaggagtaagttttggttccggtgagtatttc |
15284429 |
T |
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| Q |
112 |
atcgatgtattcatcggtacgccaccaaaacatttttctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgtt |
211 |
Q |
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| T |
15284428 |
atcgatgtattcatcggtacgccaccaaaacatttttctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgtt |
15284329 |
T |
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| Q |
212 |
ttgatcaaaatggaccatattatgatcctaaagattccacttcttttaagaacataagttgtcacgattcgcggtgtc |
289 |
Q |
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| T |
15284328 |
ttgatcaaaatggaccatattatgatcctaaagattccacttcttttaagaacataagttgtcacgattcgcggtgtc |
15284251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 258
Target Start/End: Original strand, 39712637 - 39712846
Alignment:
| Q |
49 |
tattcaactcaacttatggccaccttggaatcaggagtaagttttggttccggtgagtatttcatcgatgtattcatcggtacgccaccaaaacattttt |
148 |
Q |
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| T |
39712637 |
tattcaagtcagcttgtggcaactttggaatcaggggtgagtcttggctctggtgagtatttcatggatgtgtttataggtacaccacctaagcattatt |
39712736 |
T |
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| Q |
149 |
ctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgttttgatcaaaatggaccatattatgatcctaaagattc |
248 |
Q |
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| T |
39712737 |
ctttgatacttgatactggtagtgatcttaattggattcaatgtgttccttgcattgcttgttttgaacaaagtggtccatattatgatcctaaagaatc |
39712836 |
T |
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| Q |
249 |
cacttctttt |
258 |
Q |
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| T |
39712837 |
tagttctttt |
39712846 |
T |
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