View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_53 (Length: 306)

Name: NF1240_low_53
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_53
NF1240_low_53
[»] chr7 (9 HSPs)
chr7 (68-299)||(8907745-8907978)
chr7 (112-245)||(11743038-11743170)
chr7 (176-247)||(31257036-31257107)
chr7 (140-225)||(28080694-28080778)
chr7 (191-247)||(48417535-48417591)
chr7 (191-287)||(21213061-21213159)
chr7 (168-247)||(23796181-23796260)
chr7 (162-247)||(2544438-2544523)
chr7 (81-230)||(48661466-48661614)
[»] chr2 (10 HSPs)
chr2 (81-247)||(15124694-15124859)
chr2 (176-230)||(8424913-8424967)
chr2 (176-230)||(25082542-25082596)
chr2 (169-230)||(15460999-15461060)
chr2 (154-247)||(17854912-17855005)
chr2 (154-247)||(36352142-36352235)
chr2 (155-230)||(5206723-5206798)
chr2 (140-247)||(33606259-33606365)
chr2 (73-225)||(16419297-16419448)
chr2 (191-247)||(40718227-40718283)
[»] chr5 (9 HSPs)
chr5 (154-247)||(20225049-20225142)
chr5 (162-230)||(1564558-1564626)
chr5 (73-225)||(24346639-24346791)
chr5 (162-230)||(25258292-25258360)
chr5 (162-230)||(25322082-25322150)
chr5 (162-225)||(6919420-6919482)
chr5 (176-230)||(33337460-33337514)
chr5 (154-247)||(38731821-38731914)
chr5 (166-230)||(15439012-15439076)
[»] chr8 (5 HSPs)
chr8 (81-230)||(3157470-3157618)
chr8 (176-225)||(8084392-8084441)
chr8 (179-247)||(16050037-16050105)
chr8 (177-247)||(34843125-34843195)
chr8 (154-247)||(10614922-10615015)
[»] chr6 (5 HSPs)
chr6 (162-247)||(6054177-6054262)
chr6 (156-247)||(27993627-27993719)
chr6 (156-225)||(10145735-10145804)
chr6 (162-247)||(6542934-6543019)
chr6 (162-247)||(9705028-9705113)
[»] chr4 (9 HSPs)
chr4 (167-210)||(5398177-5398220)
chr4 (81-222)||(35819039-35819179)
chr4 (162-225)||(21750268-21750331)
chr4 (175-230)||(30305299-30305354)
chr4 (176-247)||(36685880-36685951)
chr4 (176-230)||(18528222-18528276)
chr4 (170-223)||(43743251-43743304)
chr4 (162-230)||(18528448-18528516)
chr4 (192-248)||(35796998-35797054)
[»] chr3 (4 HSPs)
chr3 (81-247)||(13574831-13574997)
chr3 (166-230)||(20303059-20303123)
chr3 (81-225)||(37246764-37246907)
chr3 (162-247)||(54567900-54567985)
[»] chr1 (6 HSPs)
chr1 (162-209)||(16162979-16163026)
chr1 (154-221)||(38733185-38733252)
chr1 (175-230)||(46176751-46176806)
chr1 (176-230)||(25145490-25145544)
chr1 (85-230)||(27413372-27413516)
chr1 (154-210)||(9499290-9499346)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 68 - 299
Target Start/End: Original strand, 8907745 - 8907978
Alignment:
Q  68 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907745 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 8907844  T
Q  168 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttg 265  Q
    |||||||||||||||| ||||||||||||||||   |||||||| |||| |||| ||||||||||||||||||||||  |||||||||||| | ||||||    
T  8907845 catcttgaaaatcgtgattgaatctaacacaactatacaaaactaatttatgagatgatgatttctctcatttataaacacatgttcatgccatcgtttg 8907944  T
Q  266 tttgatgcgagattttttaacaatagtataatct 299  Q
    |||||||||||||| |||||||||||||||||||    
T  8907945 tttgatgcgagattctttaacaatagtataatct 8907978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 11743170 - 11743038
Alignment:
Q  112 gatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaact 211  Q
    ||||| |||||||||  |||| || ||| ||| |||||| | |||| || |||||||||||| |||||||||||| | ||||||||||   ||||||||     
T  11743170 gatagcgaaaatctgagagcaagtggtttaatggatcttga-agaggctctgatatcatcttaaaaatcgtggttaagtctaacacaattccacaaaacc 11743072  T
Q  212 gatttgtgaggtgatgatttctctcatttataaa 245  Q
    | ||||||| ||||||||| ||| ||||||||||    
T  11743071 ggtttgtgatgtgatgattgctcccatttataaa 11743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 31257036 - 31257107
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||| |||| | | || |||||||||    
T  31257036 aaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataaaca 31257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 28080778 - 28080694
Alignment:
Q  140 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    ||||||||||| | |||| || ||||||||||||  |||||||||||| |||||||| |||| |||||||| || |||||| ||||    
T  28080778 caatagatcttga-agaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaaccgacttgtgaagtga 28080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 48417535 - 48417591
Alignment:
Q  191 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||||||| |||||||||| |||||||||| | |||| |||||| |||||||||    
T  48417535 ctaacacaaccccacaaaactggtttgtgaggtcaagattgctctcacttataaaca 48417591  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 21213061 - 21213159
Alignment:
Q  191 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttgtttgatgcgagattttttaaca 287  Q
    ||||||||||  ||||||||  | |||||||||||||||| ||| || ||||||  |||||||||||||| | ||| | ||||||| |||| |||||||    
T  21213061 ctaacacaactccacaaaaccaacttgtgaggtgatgattactcccacttataaacacatgttcatgcaatcttttatctgatgcgggattctttaaca 21213159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 23796181 - 23796260
Alignment:
Q  168 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||||| |||||| |||||||  ||||||||||| |||||||   |||||||||||||||||| | | || |||||||||    
T  23796181 catcttaaaaatcatggttgagcctaacacaaccccacaaaatcaatttgtgaggtgatgattgcccccacttataaaca 23796260  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 2544438 - 2544523
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||| ||| || |||||||||||||   ||||||||||| |||||||| || ||||||||||| |||| | | || |||||||||    
T  2544438 tgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 2544523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 48661466 - 48661614
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| ||| || |  || || | ||| ||| |||||||| | ||||| | |||||| |||| || ||||||||| ||  |||||    
T  48661466 ttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtggctcaatggttcttaa-agaggctctgatatcatattagaaatc 48661564  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||  |||||||||| | |||||||| |  ||||||||||| ||||    
T  48661565 gtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggatt 48661614  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 15124694 - 15124859
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||| |||||||| || |||| ||||||   ||||||| ||||| ||||||  |||||    
T  15124694 ttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttgg-agagactctgataccatcttagaaatc 15124792  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||||||  |||||||||||| |||||||| || |||||| |||| |||| | |||| |||||||||    
T  15124793 gtggttgggtctaacacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaaca 15124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 8424967 - 8424913
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||||||||   |||||||||| |||||||||| |||||||||||||||||    
T  8424967 aaatcgtggttgagcttaacacaaccccacaaaactggtttgtgaggtgatgatt 8424913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 25082542 - 25082596
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||    
T  25082542 aaatcgtggttggacctaacacaaccccacaaaactggcttgtgaggtgatgatt 25082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 15461060 - 15460999
Alignment:
Q  169 atcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||| |||||  ||||||| |||||||||||| ||||||||||  ||||||||||||||||    
T  15461060 atcttaaaaattatggttgagtctaacacaaccccacaaaactgtcttgtgaggtgatgatt 15460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 17854912 - 17855005
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||| ||||||||| ||  ||||||||||||  |||| ||||||| |||||||| |  ||||||||||| |||| | |||| |||||||||    
T  17854912 agagactctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaaca 17855005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 36352142 - 36352235
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||| | ||| |||||| ||||| ||||||||| ||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  36352142 agagactctaataccatcttaaaaattgtggttgaacctaacacaaccccacaaaaccggcttttgaggtgatgattgcccccacttataaaca 36352235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 5206798 - 5206723
Alignment:
Q  155 gagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||| ||||| ||||||  |||||||| |||| ||| |||||||| ||||||||||| |||| |||||| ||||    
T  5206798 gagactctgataacatcttagaaatcgtgattgagtcttacacaacctcacaaaactgacttgtaaggtgaagatt 5206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 33606259 - 33606365
Alignment:
Q  140 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatt 239  Q
    ||||||||||| | ||||||| ||||||||||||  ||||||||||||   |||||| |||  ||||||||||  ||||||||||| |||| | | || |    
T  33606259 caatagatcttga-agagactttgatatcatcttagaaatcgtggttgtgcctaacataacgccacaaaactggcttgtgaggtgaggattacccccact 33606357  T
Q  240 tataaaca 247  Q
    ||||||||    
T  33606358 tataaaca 33606365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 16419448 - 16419297
Alignment:
Q  73 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 172  Q
    ||||||| ||||||||| |||||||||| ||| || || ||||| | ||| ||| |||||||| |  |||| ||||||   |||| || ||||| |||||    
T  16419448 tattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgg-agaggctctgataccatct 16419350  T
Q  173 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    |  ||||||||||||   |||| |||||| |||||||| |  |||||||||||    
T  16419349 tagaaatcgtggttgggcctaatacaaccccacaaaaccggcttgtgaggtga 16419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 40718227 - 40718283
Alignment:
Q  191 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||||||  |||||||| | ||||||||||||||||| | |||| |||||||||    
T  40718227 ctaacacaactccacaaaaccggtttgtgaggtgatgattgccctcacttataaaca 40718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 20225142 - 20225049
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||| |||||||||||| ||  |||||||||||||| ||||||||||| |||||||  || ||||||||||| ||||   ||||||||||||||    
T  20225142 agaggctatgatatcattttagaaatcgtggttgaacctaacacaaccccacaaaatcgacttgtgaggtgaggattgtcctcatttataaaca 20225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 1564558 - 1564626
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||||||||||  |||||||||||||  ||||||||||| ||||||||||  |||||| |||| ||||    
T  1564558 tgatatcatcttagaaatcgtggttgagcctaacacaaccccacaaaactgtcttgtgatgtgaggatt 1564626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 24346639 - 24346791
Alignment:
Q  73 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 172  Q
    ||||||| ||||||||| |||||||||| ||| || |  ||||  | ||| ||| |||||||| |  |||| ||||||    ||| || ||||| |||||    
T  24346639 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatct 24346738  T
Q  173 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    | |||||||||||||  |||||||||||| |||||||| |  |||||||||||    
T  24346739 taaaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtga 24346791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 25258292 - 25258360
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25258292 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 25322082 - 25322150
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25322082 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 6919420 - 6919482
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||  |||||||||||    
T  6919420 tgataccatcttaaaaatcgtggttgagcctaacacaacctcacaaaactg-cttgtgaggtga 6919482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 33337460 - 33337514
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||| ||| ||||    
T  33337460 aaatcgtggttgaacctaacacaaccccacaaaaccggtttgtgagatgaggatt 33337514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 38731821 - 38731914
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||| |||||||| ||||||  |||| |||||||   ||||||||||| |||||||  || ||||||||||| ||||  ||||| |||||||||    
T  38731821 agaggctatgatagcatcttagaaatggtggttgtgcctaacacaacctcacaaaatcgacttgtgaggtgaggattgttctcacttataaaca 38731914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 15439076 - 15439012
Alignment:
Q  166 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||||||  |||||||||||    ||||||||||| || |||||||| ||||||||||||||||    
T  15439076 atcatcttataaatcgtggttaggcctaacacaaccccataaaactgacttgtgaggtgatgatt 15439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 3157470 - 3157618
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| ||| || |  ||||| ||||| ||| |||||||| || |||| ||| ||   |||| || ||||||||||||  ||||     
T  3157470 ttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatggattttgg-agaggctctgatatcatcttataaatg 3157568  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||||||  ||||||||||| ||||||||||  ||||||||||| ||||    
T  3157569 gtggttgagcctaacacaaccccacaaaactggcttgtgaggtgaggatt 3157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 8084441 - 8084392
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    |||||||||||| | ||||||||||| |||||||||| ||||||||||||    
T  8084441 aaatcgtggttggacctaacacaacctcacaaaactggtttgtgaggtga 8084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 16050105 - 16050037
Alignment:
Q  179 tcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||| |||| |  ||| |||||||||    
T  16050105 tcgtggttgggtctaacacaaccccacaaaactgacttgtgaggtgaggattgccttcacttataaaca 16050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 34843195 - 34843125
Alignment:
Q  177 aatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||||||||| | |||||||||||| |||||||| |  ||||||||||| |||| ||| || |||||||||    
T  34843195 aatcgtggttcagtctaacacaaccccacaaaaccggcttgtgaggtgaggattgctcccacttataaaca 34843125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 10614922 - 10615015
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||| |||||||||||||||  |||||||||||||  |||| |||||| |||||||  |  ||||||||||| |||| | | ||||| ||||||    
T  10614922 agaggctatgatatcatcttataaatcgtggttgagcctaatacaaccccacaaaatcggcttgtgaggtgaagattacccccatttgtaaaca 10615015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 6054262 - 6054177
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||||||||  ||||||||||||| |||||||| | | ||||||||||| || |||||||||||||   |||| |||||||||    
T  6054262 tgatatcatcttagaaatcgtggttgagtctaacacgatcccacaaaactgacttatgaggtgatgattgtcctcacttataaaca 6054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 27993627 - 27993719
Alignment:
Q  156 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatga-tttctctcatttataaaca 247  Q
    ||||| ||||| ||| || |||||||| | || ||||||||||||| ||||||||| | ||||||||||| || |||| ||||||||||||||    
T  27993627 agactctgataccattttaaaaatcgtagatggatctaacacaacctcacaaaactaagttgtgaggtgaggattttccctcatttataaaca 27993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 10145735 - 10145804
Alignment:
Q  156 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    ||||| ||||||||||||  |||| ||||||||  |||||||||||  |||||||||| |||||||||||    
T  10145735 agactctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaactgacttgtgaggtga 10145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 6542934 - 6543019
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||| ||||||  ||||||||||||  |||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  6542934 tgataccatctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaaca 6543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 9705113 - 9705028
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||| ||||||  |||| |||||||   ||||||||||| |||||||| || |||||||||||||||| | | || |||||||||    
T  9705113 tgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaaca 9705028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 5398177 - 5398220
Alignment:
Q  167 tcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 210  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  5398177 tcatcttaaaaatcgtggttgaatctaacacaaccccacaaaac 5398220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 35819039 - 35819179
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| |||||||  ||||||| ||||  |||||| ||||||    
T  35819039 ttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttag-agagactctgatgccatcttaaaaatc 35819137  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgagg 222  Q
    |||||||   ||||||||||| ||||||||||  ||||||||    
T  35819138 gtggttgggcctaacacaacctcacaaaactggcttgtgagg 35819179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 21750268 - 21750331
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
    ||||| |||||| ||| ||||| |||  |||||||||||| |||||||||| ||||||||||||    
T  21750268 tgataccatcttaaaattcgtgattgggtctaacacaacctcacaaaactggtttgtgaggtga 21750331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 30305354 - 30305299
Alignment:
Q  175 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||||||||||||   |||||||||  ||||||| ||||||||||||||||||||    
T  30305354 aaaatcgtggttgagcataacacaactccacaaaattgatttgtgaggtgatgatt 30305299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 36685880 - 36685951
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||||||||||  ||||| |||||| ||||||||||| ||||||||||| |||  | | ||||||||||||    
T  36685880 aaatcgtggttgggtctaatacaaccccacaaaactgacttgtgaggtgaggataacccccatttataaaca 36685951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 18528222 - 18528276
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||||||| |||||||||||||  ||||||  |||||||||||||| ||||    
T  18528222 aaatcgtggttggatctaacacaaccctacaaaatcgatttgtgaggtgaggatt 18528276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 43743304 - 43743251
Alignment:
Q  170 tcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggt 223  Q
    ||||| |||||||| |||  |||||||||||| |||||||| ||||||||||||    
T  43743304 tcttggaaatcgtgtttgggtctaacacaaccccacaaaaccgatttgtgaggt 43743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 18528448 - 18528516
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||| ||||||  ||||||||||||  ||||||| || | |||||||| |||||||||||||| ||||    
T  18528448 tgataccatcttagaaatcgtggttgggtctaacaaaatctcacaaaaccgatttgtgaggtgaggatt 18528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 35796998 - 35797054
Alignment:
Q  192 taacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaacat 248  Q
    |||||||||| |||||||||| |||||||||||| |||| | | || ||||||||||    
T  35796998 taacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaacat 35797054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 13574831 - 13574997
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| ||||||||  ||| || ||||| ||| ||  ||||     
T  13574831 ttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaatt 13574930  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    |||||||   ||||||||||| ||||||||||  ||||||||||| |||||| | || |||||||||    
T  13574931 gtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggatttcccccacttataaaca 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 20303059 - 20303123
Alignment:
Q  166 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||||| ||||||||||||||  ||||||||| | |||||||| | |||||||||||| ||||    
T  20303059 atcatcttaaaaatcgtggttgagcctaacacaatcccacaaaaccggtttgtgaggtgaggatt 20303123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 37246764 - 37246907
Alignment:
Q  81 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 180  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||  |||||||| || ||||  ||||| | | ||||| ||||| |||||| ||||||    
T  37246764 ttggttcgttgacataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttga-atagactttgataccatcttaaaaatc 37246862  T
Q  181 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 225  Q
     | ||||| |||||||||||  |||||| | ||||||||||||||    
T  37246863 attgttgagtctaacacaactccacaaatccgatttgtgaggtga 37246907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 54567985 - 54567900
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 247  Q
    ||||| ||||||  ||||||||||||   ||||||||||| |||||||| |  ||||||||||| |||||| | || |||||||||    
T  54567985 tgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataaaca 54567900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 16163026 - 16162979
Alignment:
Q  162 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaa 209  Q
    |||||||||||| ||||| |||||||| |||||||||||| |||||||    
T  16163026 tgatatcatcttaaaaattgtggttgagtctaacacaaccccacaaaa 16162979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 38733252 - 38733185
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgag 221  Q
    ||||||| ||||| ||||||  |||||||||||||| ||||||||| | |||||||| || |||||||    
T  38733252 agagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccgacttgtgag 38733185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 46176806 - 46176751
Alignment:
Q  175 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    |||||| |||||||  ||||||||| | ||||||||||||||||||| ||||||||    
T  46176806 aaaatcatggttgagcctaacacaaacccacaaaactgatttgtgagatgatgatt 46176751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 25145490 - 25145544
Alignment:
Q  176 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||||||||||||  |||||||||||| |||||||| || ||||||||||| ||||    
T  25145490 aaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggatt 25145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 27413516 - 27413372
Alignment:
Q  85 ttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtgg 184  Q
    ||||| |||||||||| ||| || |  ||||| | ||||||| || ||||| ||  ||||||||||   |||| || ||||||||||||  |||||||||    
T  27413516 ttcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaatagatcttgg-agaggctctgatatcatcttagaaatcgtgg 27413418  T
Q  185 ttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 230  Q
    ||| | ||||||||||| |||||||  |  ||||||||||| ||||    
T  27413417 ttggacctaacacaacctcacaaaatcggcttgtgaggtgaggatt 27413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 9499346 - 9499290
Alignment:
Q  154 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 210  Q
    ||||||| ||||||||| ||  ||||||||||||| || ||||||||| ||||||||    
T  9499346 agagactctgatatcattttagaaatcgtggttgagtcgaacacaaccccacaaaac 9499290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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