View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_59 (Length: 288)
Name: NF1240_low_59
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 29043796 - 29043614
Alignment:
| Q |
33 |
taggcctagtgctgtcagcaatgatgaggcactctactatgagactgccagtgtgattatatgtgctgttggagcccggtacaagagctactgctcaaat |
132 |
Q |
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| T |
29043796 |
taggcctagtgctgtcagcaatgatgaggcactctactatgagactgccagtgtgattatatgtgctgttggagcccggtacaagagctactgctcaaat |
29043697 |
T |
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| Q |
133 |
atagctaggactttcttgattgatgcagaacctattcaaagcaaggcttatgaggttcttctgaaagcccatgaggcggttat |
215 |
Q |
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| T |
29043696 |
atagctaggactttcttgattgatgcagaacctattcaaagcaaggcttatgaggttcttctgaaagcccatgaggcggttat |
29043614 |
T |
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Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 2824672 - 2824854
Alignment:
| Q |
33 |
taggcctagtgctgtcagcaatgatgaggcactctactatgagactgccagtgtgattatatgtgctgttggagcccggtacaagagctactgctcaaat |
132 |
Q |
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|||||||| | ||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2824672 |
taggcctattactggcagcaacgacgaggcactctactatgagactgccagtgtgattatatgtgctcttggagcccggtacaagagctactgctcaaat |
2824771 |
T |
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| Q |
133 |
atagctaggactttcttgattgatgcagaacctattcaaagcaaggcttatgaggttcttctgaaagcccatgaggcggttat |
215 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
2824772 |
atagctagaactttcgtgattgatgcagaacctattcaaagtaaggcttatgaggttcttctcaaagcccatgaggccgttat |
2824854 |
T |
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