View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_65 (Length: 277)
Name: NF1240_low_65
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 8270008 - 8270187
Alignment:
| Q |
36 |
taatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagcttgaagcatgttcaacacaacgattttgttgtgttgaagtt |
135 |
Q |
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| T |
8270008 |
taatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagcttgaagcatgttcaacacaacgattttgttgt------gtt |
8270101 |
T |
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| Q |
136 |
gaagttgaagtggttgaaaaacaatgatccatgttatgtggtgggtgtccttaattaatttaatttttgttgaagtgggtctaaga |
221 |
Q |
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| T |
8270102 |
gaagttgaagtggttgaaaaacaatgatccatgttatgtggtgggtgtccttaattaatttattttttgttgaagtgggtctaaga |
8270187 |
T |
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