View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_66 (Length: 272)
Name: NF1240_low_66
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 16962038 - 16961916
Alignment:
| Q |
29 |
atcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggacaata |
128 |
Q |
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| T |
16962038 |
atcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggacaata |
16961939 |
T |
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| Q |
129 |
atctcaatccaaaagttagtgga |
151 |
Q |
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||||||||||||||||||||||| |
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| T |
16961938 |
atctcaatccaaaagttagtgga |
16961916 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 24827687 - 24827807
Alignment:
| Q |
31 |
cataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggacaataat |
130 |
Q |
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|||||| ||||| |||||| |||| ||| |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| |||||||| || ||| | |
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| T |
24827687 |
cataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatgatagt |
24827786 |
T |
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| Q |
131 |
ctcaatccaaaagttagtgga |
151 |
Q |
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|| ||| |||||||||||||| |
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| T |
24827787 |
cttaatgcaaaagttagtgga |
24827807 |
T |
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