View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_76 (Length: 251)
Name: NF1240_low_76
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 8269733 - 8269889
Alignment:
| Q |
10 |
aagaatatcaataaatataattctttttgataaaactagcaaacnnnnnnnctataaccctttctaatcgtatttttatctatttctctatctataataa |
109 |
Q |
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| T |
8269733 |
aagaatatcaataaatattattattttttataaaactagcaaa-tttttttctataaccctttctaatcgtatttttatctatttctctatctataataa |
8269831 |
T |
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| Q |
110 |
gtaatttaaaatattattggtaaaacaacaattaatattgtattgaaatttgataact |
167 |
Q |
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| T |
8269832 |
gtaatttaaaatattattggtaaaatgacaattaatattgcattgaaatttgataact |
8269889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 10263841 - 10263803
Alignment:
| Q |
124 |
tattggtaaaacaacaattaatattgtattgaaatttga |
162 |
Q |
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| T |
10263841 |
tattggtaaaacaacatttaatattgcattgaaatttga |
10263803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 3237347 - 3237420
Alignment:
| Q |
83 |
ttttatctatttctctatctataataagtaatttaaaatattattggtaaaacaacaattaatattgtattgaa |
156 |
Q |
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| T |
3237347 |
ttttatctatctttctctctagaataaatagttaaaaatattattgacaaaacaataattaatattatattgaa |
3237420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36750265 - 36750233
Alignment:
| Q |
124 |
tattggtaaaacaacaattaatattgtattgaa |
156 |
Q |
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| T |
36750265 |
tattggtaaaacaacatttaatattgtattgaa |
36750233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 16701048 - 16701080
Alignment:
| Q |
124 |
tattggtaaaacaacaattaatattgtattgaa |
156 |
Q |
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| T |
16701048 |
tattggtaaaacaacatttaatattgtattgaa |
16701080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 39663832 - 39663796
Alignment:
| Q |
126 |
ttggtaaaacaacaattaatattgtattgaaatttga |
162 |
Q |
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| T |
39663832 |
ttggtaaaacaacatttaatattgtattaaaatttga |
39663796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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