View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_78 (Length: 249)
Name: NF1240_low_78
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25433636 - 25433876
Alignment:
| Q |
1 |
tttatttttgaaaagttgttaatcatcaatatttggtactcagatacttaaagaaaagggactacgtcnnnnnnnaattcatcaaaccaatgtagtctaa |
100 |
Q |
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| T |
25433636 |
tttatttttgaaaagttgttaatcatcaatatttggtattcagatacttaaaaaaaagggactacgtcttttcttaattcatcaaaccaatgtagtctaa |
25433735 |
T |
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| Q |
101 |
ttaaataatgcaagtccggtcaagtttaaaagtttttataatgtaattttgtttcttgtgatttggtctttcatcaacaatatttataggctgcactggg |
200 |
Q |
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| T |
25433736 |
ttaaataatgcaagtccggtcaagtttaaaagtttttataatgtaattttgtttcttgtgttttggtctttcatcaacaatatttataggctgcaatggg |
25433835 |
T |
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| Q |
201 |
gacaagtgttaatatattttatttctactctccttcatatc |
241 |
Q |
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| T |
25433836 |
gacaagtgttaatatattttatttctactctccttcttatc |
25433876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 25440832 - 25440875
Alignment:
| Q |
107 |
aatgcaagtccggtcaagtttaaaagtttttataatgtaatttt |
150 |
Q |
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| T |
25440832 |
aatgcaagtccggtcaagtttaaaagtttttataatgtaatttt |
25440875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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