View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_8 (Length: 545)
Name: NF1240_low_8
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 148 - 536
Target Start/End: Original strand, 39421514 - 39421902
Alignment:
| Q |
148 |
gtatgttccatgagggtctactgatttgagattatatgattattcatacatttgaatggacggttaataaatacattggcaaaaaatattcttggcggtt |
247 |
Q |
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| T |
39421514 |
gtatgttccatgagggtctactgatttgagattatatgattattcatacatttgaatggacggttaataaatacattggcaaaaaatattcttggcggtt |
39421613 |
T |
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| Q |
248 |
gtttggaattgcagtagataacccgtgaaattgcagtaatttcgaagcttgcgtcggatattggacgcaagaaatggtaattgtaccaaacatcttggac |
347 |
Q |
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| T |
39421614 |
gtttggaattgcagtagacaacccgtgaaattgcagtaatttcgaagcttgcgtcggatattggacgcaagaaatggtaattgtaccaaacatcttggac |
39421713 |
T |
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| Q |
348 |
atacagtcattttcatttaatactccaaacatctgagtatatcaatcaattccaccaaaaaattgcttactttaatattctcattataaaataacggaac |
447 |
Q |
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| T |
39421714 |
atacagtcattttcatttaatactccaaacatctgagtatatcaatcaattccaccaaaaaattgcttactttaatattctcattataaaataacggaac |
39421813 |
T |
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| Q |
448 |
aaatgaaagttaatatatctaatacattttaaaattggtcaaagtttctcacaaaaagaaccaaaaaatttgacgtttcttagtataat |
536 |
Q |
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| T |
39421814 |
aaatgaaagttaatatatctaatacattttaaaattggtcaaagtttctcacaaaaagaaccaaaaaatttgacgtttcttagtataat |
39421902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 39423492 - 39423584
Alignment:
| Q |
150 |
atgttccatgaggg-tctactgatttgagatt-atatgattattcatacatttgaatggacggttaataaatacattggcaaaaaatattctt |
240 |
Q |
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| T |
39423492 |
atgttccatgagggatctgctgatctgagatttatatggttactcgtttatttcaatggaaggttaatgaatacatcgacaaaaaatattctt |
39423584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 38858986 - 38858931
Alignment:
| Q |
465 |
tctaatacattttaaaattggtcaaagtttctcacaaaaagaaccaaaaaatttga |
520 |
Q |
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| T |
38858986 |
tctaatacatttgaaaattggtcaaagtttcttataaaaaggattaaaaaatttga |
38858931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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