View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_80 (Length: 246)
Name: NF1240_low_80
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7222967 - 7222864
Alignment:
| Q |
1 |
caaaatcaaggaaagccaagagaagggaaaacatggctaaattaaagttgtcagaatcgagacttaagtcctttagttttattttaattgaattattgct |
100 |
Q |
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| T |
7222967 |
caaaatcaaggaaagccaagagaagggaaaacatggctaaattaaagttgtcagaatcgagacttaagtcctttagtgtgatgttaattgaattagtgct |
7222868 |
T |
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| Q |
101 |
ataa |
104 |
Q |
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|||| |
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| T |
7222867 |
ataa |
7222864 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11432042 - 11432108
Alignment:
| Q |
1 |
caaaatcaaggaaagccaagagaagggaaaacatggctaaattaaagttgtcagaatcgagacttaa |
67 |
Q |
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| T |
11432042 |
caaaatcaaggaaagccaagagaagggaaaacagggctaaattaaagttgccagagtcgagacttaa |
11432108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 11432342 - 11432388
Alignment:
| Q |
171 |
agtaaaattcattctgctaataatatgcgtgttttcactgttttgca |
217 |
Q |
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| T |
11432342 |
agtaaaattcattttgctaataatatgtgtgttttcactgttttgca |
11432388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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