View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_84 (Length: 229)
Name: NF1240_low_84
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 7934680 - 7934497
Alignment:
| Q |
23 |
gagaaacaaagaactcgtctatggcacatattgtaacaatgagaaacaaagaactcgtctatggcacatattgtaacaatggaatgaaagaataacgaac |
122 |
Q |
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| T |
7934680 |
gagaaacaaagaactcgtctatggcacatattgtaacaatgagaaacaaagaactcgtctatggcacatattgtaacaatggaatgaaagaataatgaac |
7934581 |
T |
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| Q |
123 |
aaaatattatgtatttttcatgagaaatattacataatacacaggaaaaaatggaacaggggttaccaaatgtggtgctgatga |
206 |
Q |
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| T |
7934580 |
aaaatattatgtatttttcatgagaaatattacataatacacaggaaaaaatggaacaggggttaccaaatgtggtgctgatga |
7934497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7934662 - 7934600
Alignment:
| Q |
1 |
ctatggcacatattgtaacaatgagaaacaaagaactcgtctatggcacatattgtaacaatg |
63 |
Q |
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| T |
7934662 |
ctatggcacatattgtaacaatgagaaacaaagaactcgtctatggcacatattgtaacaatg |
7934600 |
T |
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