View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_86 (Length: 217)
Name: NF1240_low_86
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 1760136 - 1759971
Alignment:
| Q |
27 |
cctgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttcccttc |
126 |
Q |
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| T |
1760136 |
cctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttctcttc |
1760037 |
T |
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| Q |
127 |
tttgttgttatttggaaaa-------atgaaccaactttcttactctcttcctcttccgctctctg |
185 |
Q |
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| T |
1760036 |
tttgttgttatttggaaaaccagatgatgaaccaactttcttactctcttcctcttccgctctctg |
1759971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 1739080 - 1738973
Alignment:
| Q |
32 |
gaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttcccttctttgt |
131 |
Q |
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| T |
1739080 |
gaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccatttttttctcctcattcttgttc------tcatctttccctttattgt |
1738987 |
T |
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| Q |
132 |
tgttatttggaaaa |
145 |
Q |
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| T |
1738986 |
tgttatttggaaaa |
1738973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 1744426 - 1744360
Alignment:
| Q |
29 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
95 |
Q |
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| T |
1744426 |
tgtgaagtagaaaattttcccttgcaaaataagcatgaaaaagaccttgaatccatttttttctctt |
1744360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 1724496 - 1724448
Alignment:
| Q |
27 |
cctgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagacct |
75 |
Q |
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| T |
1724496 |
cctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct |
1724448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 2022851 - 2022788
Alignment:
| Q |
32 |
gaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
95 |
Q |
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| T |
2022851 |
gaagtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattcttctctt |
2022788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 3156968 - 3157034
Alignment:
| Q |
29 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
95 |
Q |
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| T |
3156968 |
tgtgaagtagaaaattgtctcttacaaaaggagcatgaaaaagaccttgaatccgaattcttctctt |
3157034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 3167302 - 3167250
Alignment:
| Q |
29 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatc |
81 |
Q |
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| T |
3167302 |
tgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatc |
3167250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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