View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240_low_9 (Length: 534)
Name: NF1240_low_9
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 27205869 - 27206239
Alignment:
| Q |
13 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27205869 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggcggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
27205968 |
T |
|
| Q |
113 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattattttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27205969 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactattttt |
27206068 |
T |
|
| Q |
213 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206069 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgta |
27206168 |
T |
|
| Q |
313 |
gtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagagttggt |
383 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
27206169 |
gtgggagagattggtagaaatgacgttttattcgatctttctaaaactattacagaactgcgagagatggt |
27206239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 13003795 - 13003415
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaagg---tggta |
106 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||| | || | || |
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|
| T |
13003795 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcttatgccggttcaactgcacttgatgtcaaatattttagtggcattagtg |
13003696 |
T |
|
| Q |
107 |
gagtcatt---------aactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactcc |
197 |
Q |
| |
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|||||| | | || || || ||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||| ||| |
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| T |
13003695 |
gagtcagtgcaccaaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatcc |
13003596 |
T |
|
| Q |
198 |
ctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaa |
297 |
Q |
| |
|
||||| |||||||||| ||| |||||| |||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||| |
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|
| T |
13003595 |
ttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaa |
13003496 |
T |
|
| Q |
298 |
aaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
378 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||| | |||| | |||||||||||||||||| |||| | |||||| |
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|
| T |
13003495 |
aaatcattgtttatagtgggagagattggtggaaatgatattttttatcatctttctaaaactattaaagaactacgagag |
13003415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 128 - 378
Target Start/End: Original strand, 31251921 - 31252171
Alignment:
| Q |
128 |
tgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttgtttgaaataaattg |
227 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| ||| | ||| |||||||||| ||| |||||| | |
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|
| T |
31251921 |
tgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatttttgtgtgatataaatgg |
31252020 |
T |
|
| Q |
228 |
tttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggt |
327 |
Q |
| |
|
||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||| |
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|
| T |
31252021 |
tttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggt |
31252120 |
T |
|
| Q |
328 |
agaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
378 |
Q |
| |
|
||||| | |||| | ||||||||||||||||||||||| | |||||| |
|
|
| T |
31252121 |
ggaaatgatattttttatcatctttctaaaactattacagaactacgagag |
31252171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 31094595 - 31094209
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagag |
109 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||||| ||| || ||| |
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|
| T |
31094595 |
aagaatatcaccaaaagccaaggtgatgtaaaaaagggagttaatttcgcttatgccggttcaactgcacttgacatcgaatatttcagtggtagtggag |
31094496 |
T |
|
| Q |
110 |
tcatta---------------actctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaac |
194 |
Q |
| |
|
|| || |||| || | | ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
31094495 |
tctctacaccacagaaagataactcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaac |
31094396 |
T |
|
| Q |
195 |
tccctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgtt---gtgagttcacagaatgtgatagcttc |
291 |
Q |
| |
|
||| ||| | |||||||||| ||| |||||| ||| || | | |||||||||||||| ||| |||| || |||||||||||||||||||||||||| |
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|
| T |
31094395 |
tccttgcttgttatttttgtgtgatataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttcacagaatgtgatagcttc |
31094296 |
T |
|
| Q |
292 |
ttcaaaaaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
378 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||| | |||| | | |||||| ||||||||||||||| ||| |||| |
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|
| T |
31094295 |
ttcaaaaaatcgttgtttatagtgggagagattggtggaaatgatattttttaccatcttttcaaaactattacagaactgcaagag |
31094209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 375 - 506
Target Start/End: Original strand, 27206427 - 27206558
Alignment:
| Q |
375 |
agagttggtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagactatgataaatttggatgt |
474 |
Q |
| |
|
|||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27206427 |
agagttggtggttttagggaacttcccaataggatgtactgctcacttattgtcaaataagattagtcagaagaaagaagactatgataaatttggatgt |
27206526 |
T |
|
| Q |
475 |
ttgatagcatacaactctttcataaaatactt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
27206527 |
ttgatagcatacaactctttcataaaatactt |
27206558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 382 - 506
Target Start/End: Complemental strand, 31093979 - 31093855
Alignment:
| Q |
382 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagactatgataaatttggatgtttgatag |
481 |
Q |
| |
|
||||||||||| || ||| |||||||||||| | || || |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31093979 |
gtggtttcaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagactatgatgaatttggatgtttgatag |
31093880 |
T |
|
| Q |
482 |
catacaactctttcataaaatactt |
506 |
Q |
| |
|
| |||||| ||||||| ||||||| |
|
|
| T |
31093879 |
cttacaacactttcatcgaatactt |
31093855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 506
Target Start/End: Complemental strand, 13003179 - 13003055
Alignment:
| Q |
382 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagactatgataaatttggatgtttgatag |
481 |
Q |
| |
|
|||||| ||||||| ||| |||| ||||||| | || || |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13003179 |
gtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagactatgatgaatttggatgtttgatag |
13003080 |
T |
|
| Q |
482 |
catacaactctttcataaaatactt |
506 |
Q |
| |
|
| |||||| || |||| ||||||| |
|
|
| T |
13003079 |
cttacaacactctcattgaatactt |
13003055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 506
Target Start/End: Original strand, 31252407 - 31252531
Alignment:
| Q |
382 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagactatgataaatttggatgtttgatag |
481 |
Q |
| |
|
|||||| ||||||| ||| |||| ||||||| | || || |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31252407 |
gtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagactatgatgaatttggatgtttgatag |
31252506 |
T |
|
| Q |
482 |
catacaactctttcataaaatactt |
506 |
Q |
| |
|
| |||||| || |||| ||||||| |
|
|
| T |
31252507 |
cttacaacactctcattgaatactt |
31252531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 31251791 - 31251876
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattattt |
95 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||| || |||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
31251791 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcctatgccggttcaactgcacttgatgtcaaatattt |
31251876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 27228710 - 27228810
Alignment:
| Q |
114 |
taactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttg |
213 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| | ||||| || |||||||||| | |||||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
27228710 |
taactcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttg |
27228809 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
27228810 |
t |
27228810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 16162788 - 16162891
Alignment:
| Q |
274 |
acagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgc |
373 |
Q |
| |
|
||||| |||||||||||||||||| || || ||| |||||||||| |||||| ||||| | ||||| || || |||||||||||||||||||| ||| |
|
|
| T |
16162788 |
acagagtgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaatgatgtttttttacatatttctaaaactattacagaactgc |
16162887 |
T |
|
| Q |
374 |
gaga |
377 |
Q |
| |
|
|||| |
|
|
| T |
16162888 |
gaga |
16162891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 497
Target Start/End: Original strand, 27229150 - 27229209
Alignment:
| Q |
438 |
tagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcat |
497 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
27229150 |
tagtcagaagaaagaagattatgatgaatttggatgtttgataacttacaacactttcat |
27229209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 506
Target Start/End: Original strand, 16163137 - 16163221
Alignment:
| Q |
422 |
tattgtcaaataaaattagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatactt |
506 |
Q |
| |
|
||||| |||| || ||||| || |||||||| || |||||| ||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
16163137 |
tattgacaaaaaagattagccaaaagaaagaggattatgatgaatttggatgtttaatagcttacaactctttcatcgaatactt |
16163221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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