View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_91 (Length: 203)
Name: NF1240_low_91
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 40965992 - 40965817
Alignment:
| Q |
1 |
attgattttattttctttcataa---atagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaa |
97 |
Q |
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| T |
40965992 |
attgattttattttctttcataataaatagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaa |
40965893 |
T |
|
| Q |
98 |
atgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcat |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40965892 |
ttgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcat |
40965817 |
T |
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