View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_93 (Length: 201)
Name: NF1240_low_93
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 40965992 - 40965799
Alignment:
| Q |
1 |
attgattttattttctttcataa---atagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaa |
97 |
Q |
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| T |
40965992 |
attgattttattttctttcataataaatagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaa |
40965893 |
T |
|
| Q |
98 |
atgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcatccatttcggtctctgtat |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40965892 |
ttgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcatccatttcggtctctgtat |
40965799 |
T |
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