View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241-Insertion-3 (Length: 664)
Name: NF1241-Insertion-3
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 287 - 661
Target Start/End: Complemental strand, 27126172 - 27125792
Alignment:
| Q |
287 |
ctatacacttgtattgtagatacgtcattacataaaatgaatgcattgagt-----atgctacctatttttctcaatgtatatgtgaaaatttggatgcc |
381 |
Q |
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| T |
27126172 |
ctatacacttgtattgtagatacatcattacataaaatagatgcattgaattgaatatgctacctatttttctcaatatatatgtgaaaatttggatgcc |
27126073 |
T |
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| Q |
382 |
ttagtcacgtaatctcgtattgaagtttctttatttatcccttta-ttcaatacaggaagctgttaatgtatctctggggaacttactaacttatccatt |
480 |
Q |
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| T |
27126072 |
ctaatcatgtaatctcctattgaagtttctttatttatctcttttcttcaatacaggaagctgttaatgtatctctggggaacttactgacttatccatt |
27125973 |
T |
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| Q |
481 |
tgtgagagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacgattttgttaacggagcatttgaactgtgggatatagacttcaaaatt |
580 |
Q |
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| T |
27125972 |
cgtgagagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacgattttgttaacggagcatttgaactgtgggatatagacttcaaaatt |
27125873 |
T |
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| Q |
581 |
tcaccctcagtgtccttttaagatttctaaggcgtcaaaaggaaagggttcataccctacaatgcatcttgtacatcatcg |
661 |
Q |
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| T |
27125872 |
tcaccctcagtgtccttttaagatttctaaggcgtcaaaaggaaagggttcataccctacaatgcatcttgtacatcatcg |
27125792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 27126419 - 27126171
Alignment:
| Q |
8 |
gtcactatagttgctctaacaaattagtatcacgagctcgattatggatggttagaactcacaaattcagggtttaaacttcatctcttgcaacgatgac |
107 |
Q |
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| T |
27126419 |
gtcactatagttgttctaacaaattggtatcacgagctcgattatgggtggttagaactcaaaaattcagggtttaaacttcatctgttgcaacgatgac |
27126320 |
T |
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| Q |
108 |
tcttagtaatggtctccccaatacattctcagttcttgatggcaagaattgggaaagacgacataaagagatgaaagctctatttgactttcaagatata |
207 |
Q |
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| T |
27126319 |
tcttagtaatggtctccccaatacattctcagttcttgatggcaagaattgggaaagacggcataaagagatgaaagctctatttggctttcaagatata |
27126220 |
T |
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| Q |
208 |
ctcgtagtaatggatttgtcaatttgaaaaatagagggactattttgct |
256 |
Q |
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| T |
27126219 |
ctcgtagtaatggatttgtcaatttgaaaaatagagggactattttgct |
27126171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 434 - 565
Target Start/End: Original strand, 14829112 - 14829243
Alignment:
| Q |
434 |
caggaagctgttaatgtatctctggggaacttactaacttatccatttgtgagagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacg |
533 |
Q |
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| T |
14829112 |
caggaagctgtgaatgtatcgcttgggaacttattgacttatccatttgtgagagatggtgttgtgaagaaaagccttgctttgaaaggagcacattaca |
14829211 |
T |
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| Q |
534 |
attttgttaacggagcatttgaactgtgggat |
565 |
Q |
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| T |
14829212 |
attttgttaatggcacatttgagctgtgggat |
14829243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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