View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241-Insertion-4 (Length: 575)
Name: NF1241-Insertion-4
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241-Insertion-4 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 176289 - 175724
Alignment:
| Q |
8 |
aaacccccaagctgaagttatgcagaggtagaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatgtgccatga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176289 |
aaacccccaagctgaagttatgcagaggtagaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatgtgccatga |
176190 |
T |
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| Q |
108 |
ccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176189 |
ccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattc |
176090 |
T |
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| Q |
208 |
ccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaaatttcat |
307 |
Q |
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| T |
176089 |
ccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacatcat |
175990 |
T |
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| Q |
308 |
tttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagact |
407 |
Q |
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| T |
175989 |
tttga---attccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagact |
175893 |
T |
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| Q |
408 |
tttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatgg-ttgaaga |
506 |
Q |
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| T |
175892 |
tttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatggtttgaaga |
175793 |
T |
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| Q |
507 |
cagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagc |
575 |
Q |
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| T |
175792 |
cagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagc |
175724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 297
Target Start/End: Original strand, 7564960 - 7565106
Alignment:
| Q |
151 |
ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc |
250 |
Q |
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| T |
7564960 |
ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatcc |
7565059 |
T |
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| Q |
251 |
ttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
297 |
Q |
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| T |
7565060 |
ttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
207 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
297 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 55419619 - 55419478
Alignment:
| Q |
156 |
ttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctc |
255 |
Q |
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| T |
55419619 |
ttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttc |
55419520 |
T |
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| Q |
256 |
caagagttggtgcctaaagtgtgagccttaacttgagttttg |
297 |
Q |
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| T |
55419519 |
caaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 154 - 292
Target Start/End: Complemental strand, 3926898 - 3926760
Alignment:
| Q |
154 |
ttttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttc |
253 |
Q |
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| T |
3926898 |
ttttgattttctatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcc |
3926799 |
T |
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| Q |
254 |
tccaagagttggtgcctaaagtgtgagccttaacttgag |
292 |
Q |
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| T |
3926798 |
tccaaaaattggtacctagagtatgaaccctaacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
232 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
300 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 3926979 - 3926917
Alignment:
| Q |
37 |
agaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatg |
99 |
Q |
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| T |
3926979 |
agaccaaaatcgggccgtgaaatctcttgataggactcgtttcctaaatcaagagaaagaatg |
3926917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
232 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
297 |
Q |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
232 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
297 |
Q |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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