View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241-Insertion-5 (Length: 427)
Name: NF1241-Insertion-5
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 10729241 - 10729579
Alignment:
| Q |
8 |
gggttgagcagaatccttgagaggatcaatggagacgacaaccttagcaacaggaagagaagagtcggaagaagatgggccccgcaaagattgagccaca |
107 |
Q |
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| T |
10729241 |
gggttgagcagaatccttgagaggatcaatggagacgacgaccttagcaacaggaagagaagagtcagaagaagatggtccccgcaaagattgagccaca |
10729340 |
T |
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| Q |
108 |
accggcggacatttcatcaaccaaaccggtgcatctgcctttgaagtgtcgacgtaaccaccgacacgtccgcca---------ccgctgttgtttttct |
198 |
Q |
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| T |
10729341 |
accggcggacatttcatcaaccaaaccggtgcatctgcctttgaagtgtcgacgtaaccaccgacacgtccgccaccaccgccgccgctgttgtttttct |
10729440 |
T |
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| Q |
199 |
ctttggtttcgacgctgccgtattcgtccaccttttcctccttctttatcattgtcgcaaaattcgttcttgttcgttcttctcgttactgtaatattca |
298 |
Q |
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| T |
10729441 |
ctttggttccgccgctgccgtattcgtccacccgttcctccttctttatcattgtcgcaaaattcgttcttgttcgttcttctcgttactgtaatattca |
10729540 |
T |
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| Q |
299 |
gatacaatgttaagccttcagtccctctggtatatttat |
337 |
Q |
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| T |
10729541 |
gatacaatgttaagccttcagtccctctcgcatatttat |
10729579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 10729755 - 10729852
Alignment:
| Q |
329 |
tatatttatataggggaaaaagacaaattagtccttcaccgaatcgttatttttatccgacgtagaacaaaaataacgattcggactcggttgagttta |
427 |
Q |
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| T |
10729755 |
tatatttatataggg-aaaaagacaaattagtccttcaccgaatcgttatttttatccgacgcagaacaaaaataacgattcggactcagttgagttta |
10729852 |
T |
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