View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241-Insertion-7 (Length: 394)
Name: NF1241-Insertion-7
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 7917676 - 7917290
Alignment:
| Q |
8 |
cgaagaacctgttgaacagatatcttctcaaaaactagacaaacatcaagttcatcagcaaccaaggatttcaataaagaaaagaccacaagataatcta |
107 |
Q |
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| T |
7917676 |
cgaagaacctgttgaacagatatcttctcaaaaacttgacaaacatcaagttcatcagcaaccaaggatttcaataaagaaaagaccacaagataatcta |
7917577 |
T |
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| Q |
108 |
ttcacaatgcactcagttgatccgcaacttcaatctagccgtgccgaaaactataatcacagcattgacgccaacatgcagccaaggatttcaatcaaga |
207 |
Q |
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| T |
7917576 |
ttcacaatgcactcagttgatccgcaacttcaatctagccgtgccgaaaactataatcacagcaatgatggcaacatgcagccaaggatttcaatcaaga |
7917477 |
T |
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| Q |
208 |
gacgaccgcgaccgcaaggtattcctccatcaacgacatactcagttaatccacaagtccatcctaggtatgatgaaagatacaatctcaagggacccaa |
307 |
Q |
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| T |
7917476 |
gacgaccgcgaccgcaaggtattcctccatcaacgacacactcggttaatccacaagtccatcctaggtatgatgaaagatacaatctcaagggacccaa |
7917377 |
T |
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| Q |
308 |
tcaacaaccaaggattttagtagagacacctcggcatgtttcttcacccccaaggcactgtgaagatccgcaaggtattccttcatc |
394 |
Q |
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| T |
7917376 |
tcaacaaccaaggattttagtagagacacctcggcatgtttcttcacccccaaggcactgtgaagatccgcaaggtattccttcatc |
7917290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 219 - 381
Target Start/End: Complemental strand, 7917309 - 7917147
Alignment:
| Q |
219 |
ccgcaaggtattcctccatcaacgacatactcagttaatccacaagtccatcctaggtatgatgaaagatacaatctcaagggacccaatcaacaaccaa |
318 |
Q |
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| T |
7917309 |
ccgcaaggtattccttcatcaacaacatactcagttaatccacaagtccattctaggtatgatggaagatacaatctcaagggaaccaaccaacaaccaa |
7917210 |
T |
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| Q |
319 |
ggattttagtagagacacctcggcatgtttcttcacccccaaggcactgtgaagatccgcaag |
381 |
Q |
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| T |
7917209 |
ggattttagtatagacacctcgacatgttacttcacctccaaggcatggtgtagatccgcaag |
7917147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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