View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12410_high_7 (Length: 205)
Name: NF12410_high_7
Description: NF12410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12410_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 31868709 - 31868876
Alignment:
| Q |
19 |
tcattgaccccattatttatttcatcacatttcaactcattgaaggtaattagatcannnnnnnnnnnnnnnnctacatacccttttgaacaatcttgat |
118 |
Q |
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| T |
31868709 |
tcatcgaccccattatttatttcatcacatttcaactcattgaaggtaattagatcatttttttagtgtttttctacatacccttttgaacaatcttgat |
31868808 |
T |
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| Q |
119 |
cc-atgtaattgttcatgattnnnnnnnttagtttttt-attgaaaaattgtgattttagtatttggttct |
187 |
Q |
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| T |
31868809 |
ccaatgt-attgttcaagatt--aaaaattagttttttgattgaaaaattgtgactttagtatttggttct |
31868876 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 24929185 - 24929131
Alignment:
| Q |
19 |
tcattgaccccattatttatttcatcacatttcaactcattgaaggtaattagat |
73 |
Q |
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| T |
24929185 |
tcattgagcacattatttatttcatcacatttcaactctttgaaggtaattagat |
24929131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 24929113 - 24929020
Alignment:
| Q |
92 |
ctacatacccttttgaacaatcttgatccatgtaattgttcatgattnnnnnnnttagttttttattgaaaaattgtgattttagtatttggtt |
185 |
Q |
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| T |
24929113 |
ctacatacccttttgaacaatcttgcttcatgttactgttcatgattcaaaaattaattttttgattgaaaaattgtaactttagtaattggtt |
24929020 |
T |
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