View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12410_low_1 (Length: 500)
Name: NF12410_low_1
Description: NF12410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12410_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 38408660 - 38409127
Alignment:
| Q |
20 |
gtaagagaatgaacaaaaatttacaatggtatggcagatttgggatactgcaggacaggaaagattccatagtcttggagctgcattttacagaggggca |
119 |
Q |
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| T |
38408660 |
gtaagagaatgaacaaaaatttacaatggtatggcagatttgggatactgcaggacaggaaaggttccatagtcttggagctgcattttacagaggggca |
38408759 |
T |
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| Q |
120 |
gattgttgtgttttggtatatgatgtaaatatacacaaaacatttgatacattaaacaattggcatgatgactttctcaagcaggtgtgtgttttctatt |
219 |
Q |
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| T |
38408760 |
gattgttgtgttttggtatatgatgtaaatatacacaaaacatttgatacattaaacaattggcatgatgactttctcaagcaggtgtgtgttttctatt |
38408859 |
T |
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| Q |
220 |
tgcacaatttgnnnnnnnacctttgtttggcttacaatctggaggttatgtgattattgctgctaatcttatatacttaaataaatgaattgaagtgatg |
319 |
Q |
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| T |
38408860 |
tgcacaagttgtttttttacctttgtttggcttacaatctggaggttatgtgattattgttgctaatcttatatacttaaataaatgaattgaagtgatg |
38408959 |
T |
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| Q |
320 |
gtagtttagagatgagaaatgtttaaaatcatctggatcaaatggaacggcttaaccggttgaaacggaaactagttagtttgatcccttacattgtagt |
419 |
Q |
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| T |
38408960 |
gtagtttagagatgagaaatgtttaaaatcatctggatcaaatggaacggcttaaccggttgaaacggaaactagttagtttgatcctttacattgtagt |
38409059 |
T |
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| Q |
420 |
tgggttgaacagaaattgaactagaattgaattgaattggttttcaaatcctagttccatccctgtct |
487 |
Q |
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| T |
38409060 |
tgggttgaacagaaattgaactagaattgaattgaattggttttcaaatcctagttccatccctgtct |
38409127 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 43947755 - 43947831
Alignment:
| Q |
55 |
agatttgggatactgcaggacaggaaagattccatagtcttggagctgcattttacagaggggcagattgttgtgtt |
131 |
Q |
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|||| ||||||||||| ||||| || |||||||| |||||||||| ||| ||||| |||||||| ||||| |||||| |
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| T |
43947755 |
agatatgggatactgctggacaagagagattccaaagtcttggagttgcgttttatagaggggcggattgctgtgtt |
43947831 |
T |
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