View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12410_low_2 (Length: 433)
Name: NF12410_low_2
Description: NF12410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12410_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 48252499 - 48252632
Alignment:
| Q |
20 |
ttttcctaccaaatccggtggactatgcaaactagcggttcttcgtaggtttgtaagttgaactaaaagacagatattcctatgtgttccgttccaggtt |
119 |
Q |
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| T |
48252499 |
ttttcctaccaaatccggtggactatgcaaactagcggttcttcgtaggtttgtaagttgaactaaaagacagatattcctatgtgttccgttccagg-t |
48252597 |
T |
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| Q |
120 |
ttacatacac---atttgacattatgttaaaagat |
151 |
Q |
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| T |
48252598 |
ttacatacacattatttgacattatgttaaaagat |
48252632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 315 - 422
Target Start/End: Original strand, 48252830 - 48252937
Alignment:
| Q |
315 |
ttaatgaaataaattaagccgccacgaaaaaagactttttcttcttttgtagttttccgacttcatgcttgcagtgaacttctcatctaatctccgtttg |
414 |
Q |
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| T |
48252830 |
ttaatgaaataaattaagccgccacgaaaaaagactttttcttcttttgtagttttccgacttcatgcttgcagtgaacttctcatctaatctccgtttg |
48252929 |
T |
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| Q |
415 |
gcttctct |
422 |
Q |
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|||||||| |
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| T |
48252930 |
gcttctct |
48252937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 48252627 - 48252735
Alignment:
| Q |
185 |
aaagatcgaactgacaaatgttttcatttctgggacatgacatgattcaagaaagtgtagaccattgtattttgaataaaatggtactgtaattggcgtg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48252627 |
aaagatcgaactgacaaatgttttcatttctgggacatgacatgattcaagaaagtgtagaccattgtattttgaataaaatggtactgtaattggtgtg |
48252726 |
T |
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| Q |
285 |
tcttcaatt |
293 |
Q |
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| T |
48252727 |
tcttcaatt |
48252735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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