View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12410_low_3 (Length: 303)
Name: NF12410_low_3
Description: NF12410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12410_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 279881 - 279584
Alignment:
| Q |
17 |
actttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgca |
116 |
Q |
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| T |
279881 |
actttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgca |
279782 |
T |
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| Q |
117 |
tatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaa |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279781 |
tatcaaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaa |
279682 |
T |
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| Q |
217 |
------------------accatgttgtgtacccgtaaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
296 |
Q |
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| T |
279681 |
accaggttgactaacggtaccatgttgtgtacccgtcaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
279584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 290326 - 290148
Alignment:
| Q |
17 |
actttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgca |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||| |||||||| |||||||||| || |
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| T |
290326 |
actttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttca |
290227 |
T |
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| Q |
117 |
tatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaaga |
195 |
Q |
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| T |
290226 |
tatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 24532053 - 24531886
Alignment:
| Q |
17 |
actttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgca |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||| |||||||||| || |
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| T |
24532053 |
actttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagtttctttca |
24531954 |
T |
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| Q |
117 |
tatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
184 |
Q |
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| T |
24531953 |
tatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 24525381 - 24525213
Alignment:
| Q |
17 |
actttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagga-cccccaacaatgccagtttcttgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| || ||||||||||| |||||||||| | |
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| T |
24525381 |
actttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccagtttctttc |
24525282 |
T |
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| Q |
116 |
atatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
184 |
Q |
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||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24525281 |
atatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24525213 |
T |
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