View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12410_low_4 (Length: 290)
Name: NF12410_low_4
Description: NF12410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12410_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 82 - 272
Target Start/End: Complemental strand, 40129797 - 40129607
Alignment:
| Q |
82 |
agtgtgctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagacaacaaactgcgtca |
181 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
40129797 |
agtgagctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagataacaaactacgtca |
40129698 |
T |
|
| Q |
182 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgtttctgatgtattcagctgttgtggatcatacttattg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40129697 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgttcctgatgtattcagctgttgtggatcatacttattg |
40129607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 40140774 - 40140722
Alignment:
| Q |
110 |
agtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40140774 |
agtggaaactgatttgcaagctggagctaatcacggatacgaggtaaaacaat |
40140722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 31828849 - 31828913
Alignment:
| Q |
102 |
atttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattaga |
166 |
Q |
| |
|
||||||| ||||||||| |||||||| || |||||||||||| |||||||||||| || ||||| |
|
|
| T |
31828849 |
atttttgtagtggaaaccgatttgcaggccggagctaaccacaaatatgaggtaaagcatttaga |
31828913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University