View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12411_high_3 (Length: 369)
Name: NF12411_high_3
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 27887081 - 27887423
Alignment:
| Q |
13 |
aacctgtgacttacttaagatgcacacagcacaagcctcttaccacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27887081 |
aacctgtgacttacttaagatgcacacaacacaagcctcttaccacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttact |
27887180 |
T |
|
| Q |
113 |
gttatatattgaatttacannnnnnnnn-gttgaattgaatttacattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaa |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27887181 |
gttatatattgaatttacattttttttttgttgaattgaatttacattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaa |
27887280 |
T |
|
| Q |
212 |
ttagttaccatcataatatcatataaatcttatgagttatcttcttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27887281 |
ttagttaccatcataatatcatataaatcttatgagttatcttcttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacata |
27887380 |
T |
|
| Q |
312 |
cctaatattttagctattcgttttccatgaagtggtcaggttt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27887381 |
cctaatattttagctattcgttttccatgaagtggttaggttt |
27887423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University