View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12411_high_6 (Length: 260)
Name: NF12411_high_6
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 34161000 - 34161216
Alignment:
| Q |
23 |
agcagcacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
122 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161000 |
agcaccacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
34161099 |
T |
|
| Q |
123 |
attccaacaccactcataatttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaacc |
222 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34161100 |
attccaacaccactcataacttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctactttataatacctaacc |
34161199 |
T |
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| Q |
223 |
attagtctaatatgatt |
239 |
Q |
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||||||||||||||||| |
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| T |
34161200 |
attagtctaatatgatt |
34161216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 31979699 - 31979504
Alignment:
| Q |
23 |
agcagcacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
122 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31979699 |
agcaccacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctctagg |
31979600 |
T |
|
| Q |
123 |
attccaacaccactcataatttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31979599 |
attccaacaccactcataatttactaattaaatttatagttaaatttctactctctttaaacgattatgaatcataatttctactctataatacct |
31979504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 25673228 - 25673158
Alignment:
| Q |
168 |
ttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgat |
238 |
Q |
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||||| ||| |||||||| |||||||||| | |||||||| |||||| |||||||||||||||||||||| |
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| T |
25673228 |
ttcttttctttttaaacggttatgaatcatactttctactctataatatctaaccattagtctaatatgat |
25673158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 14490591 - 14490497
Alignment:
| Q |
144 |
tactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgat |
238 |
Q |
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|||||| |||| ||||| || |||||||| ||||||||||| |||||||||| | |||||||| | |||| |||||||||||| ||||||||| |
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| T |
14490591 |
tactaaataaaattatatttcaatttctttcctctttaaacggttatgaatcatactttctactctacaatatctaaccattagtttaatatgat |
14490497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 43656485 - 43656391
Alignment:
| Q |
142 |
tttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatg |
236 |
Q |
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|||||||| |||| |||| || |||||||| |||||||||||| ||||| |||| | |||||||| |||||| ||||||||||| ||||||| |
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| T |
43656485 |
tttactaaataaaagtatatttgaatttcttttctctttaaacggttatggatcatactttctactctataatatataaccattagtttaatatg |
43656391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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