View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12411_low_10 (Length: 255)

Name: NF12411_low_10
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12411_low_10
NF12411_low_10
[»] chr6 (8 HSPs)
chr6 (19-231)||(15398104-15398316)
chr6 (19-231)||(15409891-15410103)
chr6 (26-149)||(7813986-7814109)
chr6 (19-149)||(7871211-7871341)
chr6 (26-132)||(7806765-7806871)
chr6 (20-132)||(14439219-14439331)
chr6 (86-150)||(7859922-7859986)
chr6 (59-150)||(14436121-14436212)
[»] chr7 (1 HSPs)
chr7 (25-149)||(19317659-19317783)
[»] chr1 (1 HSPs)
chr1 (28-147)||(37997596-37997715)
[»] chr3 (1 HSPs)
chr3 (19-147)||(43694521-43694649)
[»] chr4 (1 HSPs)
chr4 (19-147)||(14017658-14017786)
[»] scaffold1089 (1 HSPs)
scaffold1089 (19-150)||(1577-1708)
[»] chr5 (1 HSPs)
chr5 (34-157)||(32430473-32430596)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 15398316 - 15398104
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15398316 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaat 15398217  T
Q  119 aactcatctggtaatccgctgattctatccatagctgctcttgattcctgagaaggaaggaatggttcgggagagcgtcgcggcacctattaatatcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15398216 aactcatctggtaatccgctgattctatccatagctgctcttgattcctgagaaggaaggaatggttcgggagagcgtcgcggcacctattaatatcaaa 15398117  T
Q  219 caaagtgaacgat 231  Q
    |||||||||||||    
T  15398116 caaagtgaacgat 15398104  T

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Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 15410103 - 15409891
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15410103 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaat 15410004  T
Q  119 aactcatctggtaatccgctgattctatccatagctgctcttgattcctgagaaggaaggaatggttcgggagagcgtcgcggcacctattaatatcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15410003 aactcatctggtaatccgctgattctatccatagctgctcttgattcctgagaaggaaggaatggttcgggagagcgtcgcggcacctattaatatcaaa 15409904  T
Q  219 caaagtgaacgat 231  Q
    |||||||||||||    
T  15409903 caaagtgaacgat 15409891  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 7814109 - 7813986
Alignment:
Q  26 gggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaataactcat 125  Q
    |||||||||||| |||||  |||||| ||||| ||||| | ||||||||  ||||| |  || ||||||||||||||||| |||| | ||||||||||||    
T  7814109 gggagtgaatagcagagtccggtccatcgcttggaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaataactcat 7814010  T
Q  126 ctggtaatccgctgattctatcca 149  Q
    | |||||  |||||||||||||||    
T  7814009 ccggtaaatcgctgattctatcca 7813986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 7871341 - 7871211
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    |||||| |||||||||||| | |||||| ||||||| || ||||||||||||||||| ||||| |  || |||||||| |||||||| |||| | ||||     
T  7871341 gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggttgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac 7871242  T
Q  119 aactcatctggtaatccgctgattctatcca 149  Q
    |||||||| ||||| |  |||||||| ||||    
T  7871241 aactcatcaggtaaactactgattctgtcca 7871211  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 7806765 - 7806871
Alignment:
Q  26 gggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaataactcat 125  Q
    |||||||||||| |||||| |||||||||||| ||||||| ||  ||||||||||| |  || ||| ||||||||||||| |||| |  || ||||||||    
T  7806765 gggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcat 7806864  T
Q  126 ctggtaa 132  Q
    |||||||    
T  7806865 ctggtaa 7806871  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 14439219 - 14439331
Alignment:
Q  20 agaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaata 119  Q
    ||||||| |||||| | ||| ||||||||||||||||| |||||||   | ||||| ||||| |  || || || |||||||||||||||| ||| ||||    
T  14439219 agaacggtgagtgagtggaaaagtggggtccaccgcttcgaaagaactctggtagtgaaagcgattttggtgggaagaaaagagagtatgtgacataata 14439318  T
Q  120 actcatctggtaa 132  Q
    | ||||| |||||    
T  14439319 attcatcaggtaa 14439331  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 7859986 - 7859922
Alignment:
Q  86 tttgttgggagaaaagagagtatgttacacaataactcatctggtaatccgctgattctatccat 150  Q
    |||||||| ||||||||||| |||| ||||||||||||  |||||||   | |||||||||||||    
T  7859986 tttgttggaagaaaagagaggatgtgacacaataactcgactggtaaattgttgattctatccat 7859922  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 14436121 - 14436212
Alignment:
Q  59 gaaagaagggttgtagtaaaagcaaaatttgttggga-gaaaagagagtatgttacacaataactcatctggtaatccgctgattctatccat 150  Q
    ||||||||||| ||||| ||||| |  |||| ||||| ||||||||||||||| ||| ||||| ||||| |||||  | ||||||||||||||    
T  14436121 gaaagaagggtggtagtgaaagcgat-tttgatgggaagaaaagagagtatgtgacataataattcatcgggtaagtcactgattctatccat 14436212  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 19317659 - 19317783
Alignment:
Q  25 ggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaataactca 124  Q
    ||||||||||||| ||||| ||||||| ||||| ||||||| || |||||||||||| |  |||||||||||||||||||| |||| |  ||||||||||    
T  19317659 ggggagtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttttgttgggagaaaagagagaatgtaaatcaataactca 19317758  T
Q  125 tctggtaatccgctgattctatcca 149  Q
    ||||||||  |||| ||||||||||    
T  19317759 tctggtaaatcgcttattctatcca 19317783  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 37997596 - 37997715
Alignment:
Q  28 gagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaataactcatct 127  Q
    ||||||| || ||||| ||||||||||||| |||||||  |||||||||||||| |  ||  |||| |||||||||||||||| ||||||||||||||||    
T  37997596 gagtgaacagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcgagtttcattggtagaaaagagagtatgtaacacaataactcatct 37997695  T
Q  128 ggtaatccgctgattctatc 147  Q
    |||||  |||||||||||||    
T  37997696 ggtaaatcgctgattctatc 37997715  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 43694521 - 43694649
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||  || || || ||||| ||  | || || | |||||||||||||| |||||||    
T  43694521 gagaacagcgagtgaatagaagagtggggtccaccgctttgaaagaacagtggtggtcaaagcgaatatggtcggaataaaagagagtatgtgacacaat 43694620  T
Q  119 aactcatctggtaatccgctgattctatc 147  Q
    |  |||||||||||  |||||| ||||||    
T  43694621 atttcatctggtaactcgctgaatctatc 43694649  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 14017786 - 14017658
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    |||||| |||||| ||||| | |||  ||||||||  || ||||||| || |||||| ||||||| |||||||||||||||| | |||||||  | ||||    
T  14017786 gagaacagggagtaaatagcatagtttggtccaccttttcgaaagaacggatgtagtgaaagcaatatttgttgggagaaaacaaagtatgtgccgcaat 14017687  T
Q  119 aactcatctggtaatccgctgattctatc 147  Q
    |||||||||| |||  |||| ||||||||    
T  14017686 aactcatctgataaatcgctaattctatc 14017658  T

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Target: scaffold1089 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 1577 - 1708
Alignment:
Q  19 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaat 118  Q
    ||||| || |||||| | ||| ||||||||||||||||| |||||||  || ||||| ||||| |  || || || |||||||||||||||| ||| |||    
T  1577 gagaatggtgagtgagtggaaaagtggggtccaccgcttcgaaagaactgtggtagtgaaagcgattttggtgggaagaaaagagagtatgtgacataat 1676  T
Q  119 aactcatctggtaatccgctgattctatccat 150  Q
    || ||||| |||||    ||||||||||||||    
T  1677 aattcatcaggtaagttactgattctatccat 1708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 32430473 - 32430596
Alignment:
Q  34 atagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaaatttgttgggagaaaagagagtatgttacacaataactcatctggtaat 133  Q
    |||| ||||||||||||||| ||| || |||||  | ||||| || ||||  || || || ||||||||||| |||| || |||||||||||  |||||     
T  32430473 ataggagagtggggtccacctcttcgagagaagcatggtagtgaaggcaagtttggtcggaagaaaagagagaatgtgacgcaataactcattaggtaag 32430572  T
Q  134 ccgctgattctatccatagctgct 157  Q
    |||||||||||||| | |||||||    
T  32430573 ccgctgattctatcgaaagctgct 32430596  T

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