View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12411_low_12 (Length: 243)
Name: NF12411_low_12
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24188104 - 24188243
Alignment:
| Q |
1 |
caagcaaaagcgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaag |
100 |
Q |
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| T |
24188104 |
caagcaaaagcgagaatgtgccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaag |
24188203 |
T |
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| Q |
101 |
cccatgctgcatcatgtttcttcaagaactcttgaagaaa |
140 |
Q |
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| T |
24188204 |
cccatgctgcatcatgtttcttcaagaactcttgaagaaa |
24188243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 24318234 - 24318441
Alignment:
| Q |
21 |
ccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
120 |
Q |
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| T |
24318234 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaagcccatgctgcatcatgtttc |
24318333 |
T |
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| Q |
121 |
ttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatcttacgcatgaggtaccagttgaagtcag |
220 |
Q |
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| T |
24318334 |
ttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatacgtatgaggtattggctgaagtcag |
24318433 |
T |
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| Q |
221 |
gtttgatg |
228 |
Q |
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| T |
24318434 |
gtttgatg |
24318441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 17430579 - 17430463
Alignment:
| Q |
66 |
gtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaac |
165 |
Q |
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| T |
17430579 |
gtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccgatctatccgaggaagaac |
17430480 |
T |
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| Q |
166 |
tcatattactgactagc |
182 |
Q |
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| T |
17430479 |
tcatatcactaactagc |
17430463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 3398954 - 3399098
Alignment:
| Q |
84 |
gaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcg |
183 |
Q |
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| T |
3398954 |
gaaacggtcgaacagattccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcg |
3399053 |
T |
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| Q |
184 |
agtgtcatcttacgcatgaggtaccagttgaagtcaggtttgatg |
228 |
Q |
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| T |
3399054 |
aatttcatcacacgtacgaggtaccggctgtagtcaggtttgatg |
3399098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 24537233 - 24537175
Alignment:
| Q |
11 |
cgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaa |
69 |
Q |
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|||||| ||||||||| |||| |||| |||||||||||||||||| |||||||| |||| |
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| T |
24537233 |
cgagaacgtgccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
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