View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12411_low_2 (Length: 487)
Name: NF12411_low_2
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 45379939 - 45380425
Alignment:
| Q |
1 |
ttagccaggatttggggaagagccaggatctttggaagagtcaagacctttcaggtaatttgactgcagaaactcctgtaattggcactcctgttgagag |
100 |
Q |
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| T |
45379939 |
ttagccaggatttggggaagagccaggatctttggaagagtcaagacctttcaggtaatttgactgcagaaactcctgtaattggcactcctgttgagag |
45380038 |
T |
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| Q |
101 |
tgtgagtgaagttgattttgctcttgctttgcaagcttctacttcatccaaaaatagtaggagttgtttaaatgttaaagctttgaacttgaactctttg |
200 |
Q |
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| T |
45380039 |
tgtgagtgaagttgattttgctcttgctttgcaagcttctacttcatccaaaaatagtaggagttgtttaaatgttaaagcattgaacttgaactctttg |
45380138 |
T |
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| Q |
201 |
aattataatgcaaatattgttggtgaaagtgaaagtaggaatgtaaatgcaaagggtaaggaaatttcaagtttggatacaggaggaggtggaggagggg |
300 |
Q |
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| T |
45380139 |
aattataatgcaaatattgttggtgaaagtgaaagtaggaatgtaaatgcaaagggtaaggaaatttcaagtttggatacaggaggaggtggaggagggg |
45380238 |
T |
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| Q |
301 |
atgattgttggaatactaataagtttgttccttatgatgatgagttctgtagcactgattatagtaaggatgcttgtttggttgatgaagagaaggaaaa |
400 |
Q |
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| T |
45380239 |
atgattgttggaatactaataagtttgttccttatgatgatgagttctgtagcactgattatagtaaggatgcttatttggttgatgaagagaaggaaaa |
45380338 |
T |
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| Q |
401 |
tgggaaacaatggggagaagattggtggtggagacaagatggaagtggtgaattatgtagcaaagactatgtcaaggaatggattgg |
487 |
Q |
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| T |
45380339 |
tgggaaacaatggggagaagattggtggtggagacaagatggaagtggtgaattatgtagtaaagactatgtcaaggaatggattgg |
45380425 |
T |
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