View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12411_low_3 (Length: 442)
Name: NF12411_low_3
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 27887011 - 27887423
Alignment:
| Q |
16 |
tgtgtttttatcctttgagtgtcttgtatccttggatccttaatattttttacataagagctaataatcaaacctgtgacttacttaagatgcacacagc |
115 |
Q |
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| T |
27887011 |
tgtgtttttatcctttgagtgtcttgtatccttggatcctcaatattttttacataagagctaataatcaaacctgtgacttacttaagatgcacacaac |
27887110 |
T |
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| Q |
116 |
acaagcctcttaccacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttactgttatatattgaatttacannnnnnnnn-g |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27887111 |
acaagcctcttaccacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttactgttatatattgaatttacattttttttttg |
27887210 |
T |
|
| Q |
215 |
ttgaattgaatttacattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaattagttaccatcataatatcatataaatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27887211 |
ttgaattgaatttacattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaattagttaccatcataatatcatataaatct |
27887310 |
T |
|
| Q |
315 |
tatgagttatcttcttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacatacctaatattttagctattcgttttccatga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27887311 |
tatgagttatcttcttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacatacctaatattttagctattcgttttccatga |
27887410 |
T |
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| Q |
415 |
agtggtcaggttt |
427 |
Q |
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|||||| |||||| |
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| T |
27887411 |
agtggttaggttt |
27887423 |
T |
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