View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12411_low_4 (Length: 422)
Name: NF12411_low_4
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12411_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 149 - 407
Target Start/End: Original strand, 22595262 - 22595524
Alignment:
| Q |
149 |
agacgtatgtgcttggatacacatttgtaaaatcacggcaaataactatattaacgcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
248 |
Q |
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| T |
22595262 |
agacgtatgtgcttggatacacgtttgcaaaatcacggcaaataactatattaactcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
22595361 |
T |
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| Q |
249 |
ttagtcatgtggagtcgatgaaaataattcaaaccaaacatatatttggtgtataagtcatctcactttatactcaacgtctaatttttcatccatccgg |
348 |
Q |
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| T |
22595362 |
ttagtcatgtggaatcgatgaaaataattcaaaccgaacatatatttggtgtataagtcatctcactttatactcaaagtctaatttttcatccatccgg |
22595461 |
T |
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| Q |
349 |
tttaagagttctaactcacat----ttactatacctacactttttcactcatgtagctctctg |
407 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22595462 |
tttaagagttctaactcacatttacttactatacctacactttttcactcatgtagctctctg |
22595524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 22594941 - 22595088
Alignment:
| Q |
1 |
aatccttaaagttaaaatcaatttcaaaaaacaagaagnnnnnnnnntactaaaagcaactaaatatatgaaagtgaaatttatatttttaaaagcactt |
100 |
Q |
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| T |
22594941 |
aatccttaaagttaaaatcaatttcaaaaaacaagaa--aaaaaaaatactaaaagcaactaaatatatgaaagtgaa-tttatatttttaaaagcactt |
22595037 |
T |
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| Q |
101 |
ttataagttaatcagccataaagatttctttcataatgttttgcaacgaga |
151 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22595038 |
ttataagtcaatcagccatgaagatttctttcataatgttttgcaacgaga |
22595088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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