View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12411_low_7 (Length: 264)

Name: NF12411_low_7
Description: NF12411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12411_low_7
NF12411_low_7
[»] chr5 (9 HSPs)
chr5 (23-234)||(9164082-9164293)
chr5 (25-234)||(30672360-30672569)
chr5 (23-234)||(19351391-19351600)
chr5 (24-82)||(40044641-40044699)
chr5 (143-194)||(12443953-12444004)
chr5 (23-110)||(40987781-40987868)
chr5 (131-180)||(27111037-27111086)
chr5 (22-75)||(27572133-27572186)
chr5 (22-54)||(11917347-11917379)
[»] chr7 (12 HSPs)
chr7 (23-234)||(7137818-7138029)
chr7 (22-237)||(43306120-43306336)
chr7 (25-235)||(40023010-40023212)
chr7 (21-122)||(40352162-40352261)
chr7 (23-110)||(323159-323246)
chr7 (23-110)||(10286870-10286957)
chr7 (20-60)||(29628047-29628087)
chr7 (23-110)||(1576285-1576372)
chr7 (22-54)||(10671762-10671794)
chr7 (23-75)||(32942167-32942219)
chr7 (22-82)||(36582087-36582147)
chr7 (22-54)||(45898169-45898201)
[»] chr4 (15 HSPs)
chr4 (22-237)||(44720653-44720867)
chr4 (60-247)||(10819984-10820166)
chr4 (23-234)||(19614992-19615203)
chr4 (21-234)||(34723632-34723845)
chr4 (22-110)||(47498423-47498511)
chr4 (23-82)||(34277429-34277488)
chr4 (23-82)||(42430472-42430531)
chr4 (23-110)||(46251517-46251604)
chr4 (29-83)||(24859424-24859478)
chr4 (19-73)||(32223409-32223463)
chr4 (21-54)||(29636714-29636747)
chr4 (21-54)||(50571067-50571100)
chr4 (22-54)||(36077514-36077546)
chr4 (23-75)||(36106508-36106560)
chr4 (23-59)||(40900187-40900223)
[»] chr8 (21 HSPs)
chr8 (23-198)||(11660964-11661138)
chr8 (133-234)||(24948278-24948379)
chr8 (28-103)||(24948396-24948471)
chr8 (23-110)||(4603063-4603150)
chr8 (21-88)||(12883805-12883872)
chr8 (23-73)||(40436378-40436428)
chr8 (131-180)||(4267737-4267786)
chr8 (21-110)||(6345738-6345827)
chr8 (143-180)||(41580377-41580414)
chr8 (23-103)||(32907380-32907460)
chr8 (23-110)||(1265547-1265634)
chr8 (23-82)||(4267835-4267894)
chr8 (23-110)||(31126838-31126925)
chr8 (23-110)||(37948522-37948609)
chr8 (23-110)||(43619617-43619704)
chr8 (23-81)||(8081824-8081882)
chr8 (21-75)||(11218890-11218944)
chr8 (23-73)||(39296425-39296475)
chr8 (26-115)||(11863967-11864056)
chr8 (23-59)||(10661096-10661132)
chr8 (134-198)||(13471218-13471282)
[»] chr6 (10 HSPs)
chr6 (23-233)||(12853068-12853277)
chr6 (146-227)||(9754580-9754661)
chr6 (23-82)||(30396034-30396093)
chr6 (22-75)||(8135377-8135430)
chr6 (26-118)||(9754684-9754776)
chr6 (23-110)||(7607860-7607947)
chr6 (27-68)||(19135208-19135249)
chr6 (22-54)||(5874261-5874293)
chr6 (22-82)||(16704941-16705001)
chr6 (23-59)||(35040314-35040350)
[»] chr1 (11 HSPs)
chr1 (26-234)||(22061809-22062019)
chr1 (23-234)||(25347581-25347791)
chr1 (23-119)||(28451266-28451362)
chr1 (25-103)||(12440825-12440903)
chr1 (23-75)||(35980475-35980527)
chr1 (23-75)||(40095509-40095561)
chr1 (23-110)||(7005142-7005229)
chr1 (20-73)||(36203533-36203586)
chr1 (24-68)||(8268600-8268644)
chr1 (23-75)||(12973502-12973554)
chr1 (23-59)||(16529604-16529640)
[»] chr3 (9 HSPs)
chr3 (131-235)||(5134888-5134992)
chr3 (21-110)||(32055432-32055521)
chr3 (23-110)||(37282225-37282312)
chr3 (25-108)||(39716828-39716911)
chr3 (25-110)||(25706736-25706821)
chr3 (23-110)||(19636123-19636210)
chr3 (143-194)||(32033739-32033790)
chr3 (22-54)||(51149766-51149798)
chr3 (23-75)||(55467730-55467782)
[»] chr2 (6 HSPs)
chr2 (23-110)||(18512014-18512101)
chr2 (28-110)||(22596793-22596875)
chr2 (21-82)||(21351875-21351936)
chr2 (23-73)||(15320669-15320719)
chr2 (22-59)||(44979873-44979910)
chr2 (38-82)||(19968640-19968684)
[»] scaffold0029 (1 HSPs)
scaffold0029 (23-59)||(40689-40725)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 9164293 - 9164082
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    |||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  9164293 taggggtgtttgcggtgcagttcggctcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcagttcggctcggttcggttggttctt 9164194  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
            ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  ||||||    
T  9164193 aaaataaaatctgaaccgaaccgatccaatttaacgcggtttaatttggatcggttttcgattatccaaattgtaaataagtgatagtagtgcccgtatt 9164094  T
Q  223 aaaaataatttt 234  Q
    ||||||||||||    
T  9164093 aaaaataatttt 9164082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 30672569 - 30672360
Alignment:
Q  25 ggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgcttnn 124  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||  |||||| |       
T  30672569 ggggtgtttgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcaattggtggtaga 30672470  T
Q  125 nnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtattaa 224  Q
          ||||||||||| ||||||||| ||| || | ||||||||||||||||||||| |||||||||||||||| |||||||| |||   || ||||||    
T  30672469 aaaaaaatccgaaccgatccgatccaaattatcgcgatttaatttggatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaa 30672370  T
Q  225 aaataatttt 234  Q
    |||| |||||    
T  30672369 aaattatttt 30672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 19351600 - 19351391
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    ||||||| |||||||  ||||| ||||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||| |||||||||||| |     
T  19351600 taggggtattcgcgg--cggttcggctcggttatgaggcaaaaagtgaaccgatccaaaatgtaaaacatgtgcggttcggctcagttcggttggtgata 19351503  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
            | | |||| || ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| | |||||| |||   || ||||    
T  19351502 aaaaaaaaaacagaactgatccgatccaaattatcgtggtttaatttggatcggttttcggttatccaaattgtaaaaaggtgatattaatattcttatt 19351403  T
Q  223 aaaaataatttt 234  Q
    ||||||||||||    
T  19351402 aaaaataatttt 19351391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 40044699 - 40044641
Alignment:
Q  24 aggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    |||||||||||||||||||||||  ||| || |||||||||| || |||||||||||||    
T  40044699 aggggtgttcgcggtgcggtttgaatcgattttgaggcaaaatgtcatccgatccaaaa 40044641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 12444004 - 12443953
Alignment:
Q  143 ccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaatt 194  Q
    ||||||||||||||   ||||||||||||||||||||| || ||||||||||    
T  12444004 ccgatccaatttaatacggtttaatttggatcggtttttgaatatccaaatt 12443953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 40987868 - 40987781
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  40987868 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 40987781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 27111086 - 27111037
Alignment:
Q  131 atccgaaccgaaccgatccaatttaacgtggtttaatttggatcggtttt 180  Q
    |||||||||||||||||||||||  | | ||||||||||||||| |||||    
T  27111086 atccgaaccgaaccgatccaattatatgcggtttaatttggatcagtttt 27111037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 27572186 - 27572133
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    ||||||||||| |||||||||||||| |||||| |||||  |||||| ||||||    
T  27572186 gtaggggtgtttgcggtgcggtttggttcggttttgaggttaaaagtcatccga 27572133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 11917347 - 11917379
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  11917347 gtaggggtgttcgcggtgcggtttggttcggtt 11917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 7138029 - 7137818
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7138029 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgcta 7137930  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
           ||||||||| || ||||||||||| |||| |||||||||||||| |||||||  ||||||||| |||||| |||||||| ||| | || ||||    
T  7137929 aaaaaaatatccgaactgatccgatccaattcaacgcggtttaatttggattggttttcagttatccaaactgtaaacaagtgatagtaatgctcttatt 7137830  T
Q  223 aaaaataatttt 234  Q
    ||||||||||||    
T  7137829 aaaaataatttt 7137818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 43306336 - 43306120
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaa-aaaataaaatatgtgcggttcggctcggttcggttggtgc 120  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |    
T  43306336 gtaggggtgttcgcggtgcggttcgtctcggttatgaagcaaaaagtgaaccgatccaaaaaaataaaatatgtgcggttcggttcggttcggttggttc 43306237  T
Q  121 ttnnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgta 220  Q
    ||        |||||||||||||||||  ||||||| | |||||||||||||||| |||||  ||||||||| |||| ||||||||||  || |   |||    
T  43306236 ttaaaataaaatccgaaccgaaccgatttaatttaatgcggtttaatttggatcgattttcagttatccaaaatgtatataagtgatataaatgcctgta 43306137  T
Q  221 ttaaaaataatttttac 237  Q
    |||||||||||||||||    
T  43306136 ttaaaaataatttttac 43306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 40023212 - 40023010
Alignment:
Q  25 ggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaa--taaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    ||||| |||||||||||||| |||||| |||||||||||||| ||| |||||||||||||  |||||||||| ||||||||          ||||||||     
T  40023212 ggggtcttcgcggtgcggttcggctcgattatgaggcaaaaattgaaccgatccaaaaaaaataaaatatgtacggttcgg----------ttggtgcta 40023123  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
           |||||||||||| | |||||||||||||  ||||||||||| ||||||||||| |||||||||||||||| ||||||||  || | || ||||    
T  40023122 aaaaatatatccgaaccgatcggatccaatttaacacggtttaatttgaatcggttttcggttatccaaattgtaaacaagtgatagcaatgctcttatt 40023023  T
Q  223 aaaaataattttt 235  Q
    |||||||| ||||    
T  40023022 aaaaataaatttt 40023010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 40352162 - 40352261
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgc 120  Q
    |||||||||||||||||| |||||  ||| ||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  40352162 agtaggggtgttcgcggtacggttcagcttggttata--gcaaaaagtgatctgatccaaaaaataaaatatgtgcggttcggctcggtttggttggtgc 40352259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 323159 - 323246
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | ||| |||| ||||||||| ||||||    
T  323159 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaattatgcgcggttcggttcggtt 323246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 10286957 - 10286870
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  10286957 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 10286870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 29628047 - 29628087
Alignment:
Q  20 gagtaggggtgttcgcggtgcggtttggctcggttatgagg 60  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  29628047 gagtaggggtgttcgcggtgcggtttggttcggttttgagg 29628087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 1576372 - 1576285
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  1576372 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 1576285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 10671762 - 10671794
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  10671762 gtaggggtgttcgcggtgcggtttggttcggtt 10671794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 32942219 - 32942167
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    |||||||||||||||||| |||||| |||||| |||||  |||||| ||||||    
T  32942219 taggggtgttcgcggtgcagtttggttcggttttgaggttaaaagtcatccga 32942167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 36582087 - 36582147
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    ||||||||||| |||||||||||| | |||||| | |||||||| || | |||||||||||    
T  36582087 gtaggggtgtttgcggtgcggtttagatcggttttaaggcaaaacgtcaaccgatccaaaa 36582147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 45898201 - 45898169
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  45898201 gtaggggtgttcgcggtgcggtttggttcggtt 45898169  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 44720653 - 44720867
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgct 121  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  44720653 gtaggggtgttcgcggtgcggttcggttcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcgattggttct 44720752  T
Q  122 tnnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtat 221  Q
    |        |||| |||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||| |||||||||| ||| |   ||||    
T  44720753 taaaataaaatccaaaccaaaccgatccaatttaatgcggtttaatttggatcggttttcggttatccaaa-tgtatataagtgatattaatgcctgtat 44720851  T
Q  222 taaaaataatttttac 237  Q
    ||||||||||||||||    
T  44720852 taaaaataatttttac 44720867  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 247
Target Start/End: Original strand, 10819984 - 10820166
Alignment:
Q  60 gcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgcttnnnnnnntatccgaaccgaaccgatccaatttaacgt 159  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||    |||  |||||       ||||| ||||||||| |||||||||||||     
T  10819984 gcaaaaagtgatccgatctaaaaaataaaatatgtgcggttcgggtcgg----gtta-tgcttaaaaaaatatccaaaccgaaccaatccaatttaacgc 10820078  T
Q  160 ggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtattaaaaataatttttacagtagatttt 247  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10820079 ggtttaatttggatcgattttcggttatccaaattgtaaataagtgataataacgctcgtattaaaaataatttttatagtagatttt 10820166  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 19615203 - 19614992
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||| ||||     
T  19615203 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaatcaaacatatgcagttcggctcggttcggttgttgcta 19615104  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
            ||||||||||| ||||||||| ||| || |||||||||||||||| |||| | |||||||||||||||| |||||||| |||   || ||||    
T  19615103 gaaaaataatccgaaccgatccgatccaaattatcgcggtttaatttggatcgatttttggttatccaaattgtaaaaaagtgatagtaatattcttatt 19615004  T
Q  223 aaaaataatttt 234  Q
    |||||| |||||    
T  19615003 aaaaattatttt 19614992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 34723845 - 34723632
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgc 120  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| || |||| ||| ||||||||||||||||||    
T  34723845 agtagaggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaatcgatccaaaaaataaaacatatgcgattcagctcggttcggttggtgc 34723746  T
Q  121 ttnnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgta 220  Q
    |         ||| ||||||| ||||||||| ||| || |||||||||||||| |||||||| |||||||||||||||| |||||||| |||   || ||    
T  34723745 tagaaaaaaaatctgaaccgatccgatccaaattatcgcggtttaatttggattggttttcggttatccaaattgtaaaaaagtgatagtaatattctta 34723646  T
Q  221 ttaaaaataatttt 234  Q
    |||||||| |||||    
T  34723645 ttaaaaattatttt 34723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 47498423 - 47498511
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    ||||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  47498423 gtaggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 47498511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 34277488 - 34277429
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    ||||||||||||||||||||||||| |||||| ||||| |||| || | |||||||||||    
T  34277488 taggggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaa 34277429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 42430531 - 42430472
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    ||||||||||||||||||||||||| |||||| |||||||||| || | || ||||||||    
T  42430531 taggggtgttcgcggtgcggtttggatcggttttgaggcaaaatgtcaacccatccaaaa 42430472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 46251517 - 46251604
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    ||||||||||| |||| |||||||| |||||| ||||  ||||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  46251517 taggggtgttcacggtccggtttggatcggttttgagagaaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 46251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 24859478 - 24859424
Alignment:
Q  29 tgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaa 83  Q
    |||||||||| |||||||| || ||| ||||||||||| | ||||||||||||||    
T  24859478 tgttcgcggtccggtttggatccgttttgaggcaaaaactcatccgatccaaaaa 24859424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 32223463 - 32223409
Alignment:
Q  19 agagtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatcc 73  Q
    ||||||||||||||||||||||||||||  |||||| |||||  |||||| ||||    
T  32223463 agagtaggggtgttcgcggtgcggtttgattcggttttgaggttaaaagtcatcc 32223409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 29636714 - 29636747
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    ||||||||||||||||||||||||||| ||||||    
T  29636714 agtaggggtgttcgcggtgcggtttggttcggtt 29636747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 50571100 - 50571067
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    ||||||||||||||||||||||||||| ||||||    
T  50571100 agtaggggtgttcgcggtgcggtttggttcggtt 50571067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 36077514 - 36077546
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  36077514 gtaggggtgttcgcggtgcggtttggttcggtt 36077546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 36106560 - 36106508
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    ||||| ||||||||||||||||||| |||||| |||||  |||||| ||||||    
T  36106560 tagggatgttcgcggtgcggtttggttcggttttgaggttaaaagtcatccga 36106508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 40900223 - 40900187
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  40900223 taggggtgttcgcggtgcggtttggttcggttttgag 40900187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 11660964 - 11661138
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||| |    
T  11660964 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaatcaaacatatgcggttcggctcggttcggttggtgc-t 11661062  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaa 198  Q
            ||||||||||| ||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||    
T  11661063 agaaaaaaatccgaaccgatccgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaa 11661138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 24948379 - 24948278
Alignment:
Q  133 ccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtattaaaaataatt 232  Q
    ||||||||| ||||||||| ||| || |||||||||||||||| |||||| |||||||||||||||| |||||||| |||   || ||||||||||||||    
T  24948379 ccgaaccgatccgatccaaattatcgcggtttaatttggatcgattttcggttatccaaattgtaaaaaagtgatattaatattcttattaaaaataatt 24948280  T
Q  233 tt 234  Q
    ||    
T  24948279 tt 24948278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 24948471 - 24948396
Alignment:
Q  28 gtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcgg 103  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||    
T  24948471 gtgttcgcggtgtggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgtggttcgg 24948396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 4603150 - 4603063
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  4603150 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 4603063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 12883872 - 12883805
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaa 88  Q
    ||||||||||||||||||||||||||| |||||| |||||  |||||| || ||| ||| ||||||||    
T  12883872 agtaggggtgttcgcggtgcggtttggttcggttttgaggttaaaagtcattcgaaccacaaaataaa 12883805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 40436378 - 40436428
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatcc 73  Q
    ||||||||||||||||||||||||| |||||| |||||  |||||||||||    
T  40436378 taggggtgttcgcggtgcggtttggttcggttttgagggtaaaagtgatcc 40436428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 4267786 - 4267737
Alignment:
Q  131 atccgaaccgaaccgatccaatttaacgtggtttaatttggatcggtttt 180  Q
    |||||||||||||||||||||||  | | |||||||||||||||||||||    
T  4267786 atccgaaccgaaccgatccaattatatgcggtttaatttggatcggtttt 4267737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6345827 - 6345738
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  6345827 agtaggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 6345738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 41580414 - 41580377
Alignment:
Q  143 ccgatccaatttaacgtggtttaatttggatcggtttt 180  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41580414 ccgatccaatttaatgtggtttaatttggatcggtttt 41580377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 32907460 - 32907380
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcgg 103  Q
    |||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| |||||||||    
T  32907460 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcgg 32907380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 1265634 - 1265547
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  1265634 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 1265547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 4267894 - 4267835
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    ||||||||||||||||||||||||| ||| || ||||| |||| || | |||||||||||    
T  4267894 taggggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatccaaaa 4267835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 31126838 - 31126925
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  31126838 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 31126925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 37948522 - 37948609
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  37948522 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 37948609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 43619617 - 43619704
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  43619617 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 43619704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 8081882 - 8081824
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaa 81  Q
    |||||||||||||||| |||||||| || ||| ||||||||||| | ||| ||||||||    
T  8081882 taggggtgttcgcggtccggtttggatcagttttgaggcaaaaactcatctgatccaaa 8081824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 11218890 - 11218944
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    |||||||||||||| |||||||||||| ||| || |||||| |||||| ||||||    
T  11218890 agtaggggtgttcggggtgcggtttggttcgattttgaggctaaaagtcatccga 11218944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 39296425 - 39296475
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatcc 73  Q
    ||||| ||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  39296425 tagggatgttcgcggtgtggtttggatcgattatgaggcaaaaagtcatcc 39296475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 11864056 - 11863967
Alignment:
Q  26 gggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggtt 115  Q
    |||||||||||||||||||||| | |||| ||||| |||| || |  |||||||||| | ||| ||  |||||||||| | |||||||||    
T  11864056 gggtgttcgcggtgcggtttggattggttttgaggtaaaatgtcaatcgatccaaaataaaaattacatgcggttcggtttggttcggtt 11863967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 10661096 - 10661132
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  10661096 taggggtgttcgcggtgcggtttggttcggttttgag 10661132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 13471282 - 13471218
Alignment:
Q  134 cgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaa 198  Q
    |||||||| ||||||||| |  | | ||||||||||||||||||||| || |||||||| |||||    
T  13471282 cgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttgaatatccaaagtgtaa 13471218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 12853068 - 12853277
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||   |    
T  12853068 taggggtgttcgcggtgcggttcgactcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgcggttcggctcggttcggttggt-aat 12853166  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
            | ||||||||| | ||||||| ||| || ||||||||||||||||||||||| |||||||||||||||| |||||||| |||   || ||||    
T  12853167 aaaaaaaaaaccgaaccgatctgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaaaaaagtgatattaatattcttatt 12853266  T
Q  223 aaaaataattt 233  Q
    |||||||||||    
T  12853267 aaaaataattt 12853277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 9754661 - 9754580
Alignment:
Q  146 atccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtattaaaaa 227  Q
    |||||||||||||||||||||||||||||| |||||  |||| |||||| ||||||||||||| ||| ||| ||||||||||    
T  9754661 atccaatttaacgtggtttaatttggatcgattttcagttattcaaattataaataagtgatagtaatgattgtattaaaaa 9754580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 30396093 - 30396034
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    |||||||||||||||| |||||||| |||||| ||||| ||||||| | |||||||||||    
T  30396093 taggggtgttcgcggtccggtttggatcggttttgaggtaaaaagtcaaccgatccaaaa 30396034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 8135377 - 8135430
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    |||||||||||||||||||| ||||| |||||| |||||| |||||| ||||||    
T  8135377 gtaggggtgttcgcggtgcgttttggttcggttttgaggctaaaagtcatccga 8135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 9754776 - 9754684
Alignment:
Q  26 gggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggt 118  Q
    ||||||| ||||||||||| |  ||  |||||||||||||||||   | ||||||||||||| |||  |||||||| | ||||||||||||||    
T  9754776 gggtgtttgcggtgcggttcgattcaattatgaggcaaaaagtggatcaatccaaaaaataatatacatgcggttcagttcggttcggttggt 9754684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 7607860 - 7607947
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  7607860 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 7607947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 19135249 - 19135208
Alignment:
Q  27 ggtgttcgcggtgcggtttggctcggttatgaggcaaaaagt 68  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  19135249 ggtgttcgcggtgtggtttggttcggttttgaggcaaaaagt 19135208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 5874293 - 5874261
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  5874293 gtaggggtgttcgcggtgcggtttggttcggtt 5874261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 16704941 - 16705001
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    ||||||||||||||||| |||||||| |||||| |||||  |||| | | |||||||||||    
T  16704941 gtaggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaa 16705001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 35040350 - 35040314
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  35040350 taggggtgttcgcggtgcggtttggttcggttttgag 35040314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 22062019 - 22061809
Alignment:
Q  26 gggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaat-aaaatatgtgcggttcggctcggttcggttggtgct-tn 123  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||       
T  22062019 gggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaaaaatatgcggttcggctcggttcggttggtgctaga 22061920  T
Q  124 nnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatta 223  Q
           ||  ||||||| ||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||| |||||||| |||   || |||||    
T  22061919 aaaaaaaatttgaaccgatccgatccaaattatcgtggtttaatttggatcggttttcagttatccaaattgtaaaaaagtgatagtaatattcttatta 22061820  T
Q  224 aaaataatttt 234  Q
    ||||| |||||    
T  22061819 aaaattatttt 22061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 25347791 - 25347581
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgctt 122  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||| |   |    
T  25347791 taggggtgttcgcggtgtggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgcggtttggctcggttcggttgat-aat 25347693  T
Q  123 nnnnnnntatccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtatt 222  Q
            | |||||| || ||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||| |||||||| |||   || ||||    
T  25347692 aaaaaaaaaaccgaactgatccgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaaaaaagtgatattaatattcttatt 25347593  T
Q  223 aaaaataatttt 234  Q
    ||||||||||||    
T  25347592 aaaaataatttt 25347581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 28451266 - 28451362
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtg 119  Q
    ||||||||||||| |||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28451266 taggggtgttcgcagtgcggttcgactcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtg 28451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 12440825 - 12440903
Alignment:
Q  25 ggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcgg 103  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||    
T  12440825 ggggtgttcgtggtgtggttcggctcggttatgaggcaaaaagtgaaccgatacaaaaaataaaaaatgtgcggttcgg 12440903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 35980527 - 35980475
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||| ||||||    
T  35980527 taggggtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccga 35980475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40095561 - 40095509
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    ||||||||||||||||||||||||| |||||| |||||  |||||| ||||||    
T  40095561 taggggtgttcgcggtgcggtttggttcggttttgaggttaaaagttatccga 40095509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 7005229 - 7005142
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| || ||||  |||||| ||| ||||||| | |||||||| ||| || ||| ||| |||||||||| ||||||    
T  7005229 taggggtgttcgcggtccgatttgaatcggttttgaagcaaaaactcatccgatctaaagaaaaaattatatgcggttcggttcggtt 7005142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 36203586 - 36203533
Alignment:
Q  20 gagtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatcc 73  Q
    |||||||||||||||||||||| ||||| |||||| |||||  |||||| ||||    
T  36203586 gagtaggggtgttcgcggtgcgatttggttcggttttgaggttaaaagtcatcc 36203533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 8268600 - 8268644
Alignment:
Q  24 aggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagt 68  Q
    |||||||| ||||||||||||||| |||||| |||||| ||||||    
T  8268600 aggggtgtacgcggtgcggtttggttcggttttgaggctaaaagt 8268644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 12973502 - 12973554
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    ||||||||||||||||||||||||| |||||| ||| ||  ||||| ||||||    
T  12973502 taggggtgttcgcggtgcggtttggttcggttttgaagctgaaagtcatccga 12973554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 16529640 - 16529604
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  16529640 taggggtgttcgcggtgcggtttggttcggttttgag 16529604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 5134992 - 5134888
Alignment:
Q  131 atccgaaccgaaccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaattgtaaataagtgataataacgatcgtattaaaaataa 230  Q
    ||||||||| | |||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||  || | || ||||||||||||    
T  5134992 atccgaaccaatccgatccaatttaacgcgatttaatttggatcagttttcggttatccaaattgtaaataagtgatagcaatgctcttattaaaaataa 5134893  T
Q  231 ttttt 235  Q
     ||||    
T  5134892 atttt 5134888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 32055432 - 32055521
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  32055432 agtaggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 32055521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 37282225 - 37282312
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| |||||  |||| | | ||||||||||| | |||  ||||||||||||| ||||||    
T  37282225 taggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcatgtgcggttcggttcggtt 37282312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 39716828 - 39716911
Alignment:
Q  25 ggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcgg 108  Q
    |||||||||||||| |||||||| |||||| |||||  |||||||| | ||||||||| | |||  ||||||||||||| ||||    
T  39716828 ggggtgttcgcggtccggtttggatcggttttgaggggaaaagtgaactgatccaaaataaaaatcatgtgcggttcggttcgg 39716911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 25706821 - 25706736
Alignment:
Q  25 ggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||| |||||||| ||| || |||||  |||||||| |||||| |||| | |||  ||||||||||||| ||||||    
T  25706821 ggggtgttcgcggttcggtttggatcgattttgaggggaaaagtgaaccgatctaaaataaaaatcatgtgcggttcggttcggtt 25706736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 19636123 - 19636210
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| || ||||| |||||| ||||| ||||| | | ||||||||||| | |||  | ||||||||||| ||||||    
T  19636123 taggggtgttcgcggtccgatttggatcggttttgaggtaaaaaattaaccgatccaaaataaaaatcacgtgcggttcggttcggtt 19636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 32033739 - 32033790
Alignment:
Q  143 ccgatccaatttaacgtggtttaatttggatcggttttcgattatccaaatt 194  Q
    |||||||||||||| | ||||||||||||||||||||| |  ||||||||||    
T  32033739 ccgatccaatttaatgcggtttaatttggatcggtttttggatatccaaatt 32033790  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 51149798 - 51149766
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggtt 54  Q
    |||||||||||||||||||||||||| ||||||    
T  51149798 gtaggggtgttcgcggtgcggtttggttcggtt 51149766  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 55467782 - 55467730
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccga 75  Q
    |||| ||||| |||||||||||||| |||||| |||||| |||||| ||||||    
T  55467782 taggtgtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccga 55467730  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 18512101 - 18512014
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    |||||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||| | |||  ||| ||||||||| ||||||    
T  18512101 taggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 18512014  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 22596875 - 22596793
Alignment:
Q  28 gtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaaaataaaatatgtgcggttcggctcggtt 110  Q
    ||||||| |||||||||||| |||||| |||||||||| || | |||||| |||| | ||| |||||||||||| | ||||||    
T  22596875 gtgttcggggtgcggtttggatcggttttgaggcaaaacgtcaaccgatctaaaataaaaattatgtgcggttcagttcggtt 22596793  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 21351875 - 21351936
Alignment:
Q  21 agtaggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    |||| |||||||||||||||||||||| |||||| ||||| |||| || | |||||||||||    
T  21351875 agtaagggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaa 21351936  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 15320719 - 15320669
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgaggcaaaaagtgatcc 73  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||| ||||    
T  15320719 taggggtgttcgcggtgcggtttggttcgattttgaggctaaaagtcatcc 15320669  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 44979910 - 44979873
Alignment:
Q  22 gtaggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  44979910 gtaggggtgttcgcggtgcggtttggttcggttttgag 44979873  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 19968684 - 19968640
Alignment:
Q  38 tgcggtttggctcggttatgaggcaaaaagtgatccgatccaaaa 82  Q
    |||||||||| |||||| ||||||||||||| |||| ||||||||    
T  19968684 tgcggtttggatcggttttgaggcaaaaagttatccaatccaaaa 19968640  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 40725 - 40689
Alignment:
Q  23 taggggtgttcgcggtgcggtttggctcggttatgag 59  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  40725 taggggtgttcgcggtgcggtttggttcggttttgag 40689  T

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