View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12412_high_2 (Length: 373)
Name: NF12412_high_2
Description: NF12412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12412_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 28853628 - 28853296
Alignment:
| Q |
15 |
ctgtgctcgctccttctcttctggtccatcaagatcgccaatattgtcatgatattcctaaagggggnnnnnnngcaatccattagagcttctgaatttg |
114 |
Q |
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| T |
28853628 |
ctgtgctcgctccttctcttctggtccatcaagatcgccaatattgtcatgatattcctaaagggggaaaaaaagcaatccattagagcttctgaatttg |
28853529 |
T |
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| Q |
115 |
gggattgggacttcatcgatgcatcttaaatgcaaaaaccaacactaacagagtgacaaaatataaaatatgaatttattcaatcatagccagaggatat |
214 |
Q |
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| T |
28853528 |
ggaattgggacttcatcgatgcatcttaaatgcaaaaaccaacactaacagagtgacaaaatataaaatatgaatttattcaatcatagccagaggata- |
28853430 |
T |
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| Q |
215 |
atatatacctgaagtatatccttgacatgctgtttactaagtttgttctgctcgagagagaagtagttcaattcttcctctcatttgcgaatgcctgacc |
314 |
Q |
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| T |
28853429 |
---tatacctgaagtatatccttgacatgctgtttactaagtttgttctgct----tgagaagtagttcaattcttcctctcatctgcgaatgcctgacc |
28853337 |
T |
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| Q |
315 |
acaaataatttaatttagtcaggcaaggtgaaaacataagt |
355 |
Q |
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| T |
28853336 |
acaaataatttaatttagtcaggcaaggtgaaaacataagt |
28853296 |
T |
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