View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12412_low_1 (Length: 437)
Name: NF12412_low_1
Description: NF12412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12412_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 49296758 - 49297167
Alignment:
| Q |
14 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296758 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49296857 |
T |
|
| Q |
114 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49296858 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49296957 |
T |
|
| Q |
214 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296958 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
49297057 |
T |
|
| Q |
314 |
ac---caggctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatg |
410 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49297058 |
accagcaggctcacacaaatctacttaataataataagttgaccttttttggttatata-tatatagagaggcaatgttgagttaatcttagagattatg |
49297156 |
T |
|
| Q |
411 |
gcactaggtat |
421 |
Q |
| |
|
||||||||||| |
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|
| T |
49297157 |
gcactaggtat |
49297167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 49289807 - 49290216
Alignment:
| Q |
14 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289807 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49289906 |
T |
|
| Q |
114 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289907 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49290006 |
T |
|
| Q |
214 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49290007 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
49290106 |
T |
|
| Q |
314 |
ac---caggctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatg |
410 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
49290107 |
accagcaggctcacacaaatctacttaataataataagttgaccttttttggttatata-tatagagagaggcaatgttgagttaatcttagagattatg |
49290205 |
T |
|
| Q |
411 |
gcactaggtat |
421 |
Q |
| |
|
||||||||||| |
|
|
| T |
49290206 |
gcactaggtat |
49290216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 49303488 - 49303788
Alignment:
| Q |
14 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303488 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49303587 |
T |
|
| Q |
114 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303588 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49303687 |
T |
|
| Q |
214 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303688 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctc |
49303787 |
T |
|
| Q |
314 |
a |
314 |
Q |
| |
|
| |
|
|
| T |
49303788 |
a |
49303788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 6568113 - 6567878
Alignment:
| Q |
22 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
121 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| ||| |
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|
| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
|
| Q |
122 |
aacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagct |
221 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||| |
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|
| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagct |
6567917 |
T |
|
| Q |
222 |
tgttggtggagccaatcaagttatgagtcttcatcttaa |
260 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
6567916 |
tgttggtggagctaatgaagttatgagccttcaccttaa |
6567878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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