View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12412_low_3 (Length: 203)
Name: NF12412_low_3
Description: NF12412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12412_low_3 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 4617793 - 4617624
Alignment:
| Q |
17 |
agacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggcccctta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
4617793 |
agacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccacaattccttctatttatccgattggcccttta |
4617694 |
T |
|
| Q |
117 |
ccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4617693 |
ccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
4617624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4564483 - 4564313
Alignment:
| Q |
16 |
gagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggcccctt |
115 |
Q |
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||||| |||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||| |||| || |||||||| || |
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| T |
4564483 |
gagactctacaattgttttgaatactttccatgaactttagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggcccttt |
4564384 |
T |
|
| Q |
116 |
accttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
4564383 |
accttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaag |
4564313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 4592997 - 4592833
Alignment:
| Q |
22 |
ctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggccccttaccttc |
121 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| || |||||||| |||||||| |
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| T |
4592997 |
ctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttc |
4592898 |
T |
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| Q |
122 |
attattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
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||||||||| |||||||||||||| ||||||||||| ||||| | ||||||| | |||||||||| |
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| T |
4592897 |
attattaaaccaaactccacaaatccatcaattggattcttttggttccaacatatggaaagaag |
4592833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 4602562 - 4602391
Alignment:
| Q |
15 |
agagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggcccct |
114 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| || | || || | |||||| | ||| | || || || | |
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| T |
4602562 |
agagactctactattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctt |
4602463 |
T |
|
| Q |
115 |
taccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
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| | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
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|
| T |
4602462 |
tgcattcattattaaatcaaactccacaaattcatcaattggactgtttaggttccaacctctggaaagaag |
4602391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 4299193 - 4299351
Alignment:
| Q |
25 |
ctattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggccccttaccttcatt |
124 |
Q |
| |
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||||| |||| ||||||| |||||||||||||||||||||| |||||||||| || || | |||||| | ||| | ||||| || ||||||||||| |
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| T |
4299193 |
ctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggacctttaccttcatt |
4299292 |
T |
|
| Q |
125 |
attaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||| ||||||| |||||| ||||||||||||| |
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| T |
4299293 |
attaaatcaaactccaca---taatcacttggaatctttaggttccaatctttggaaagaag |
4299351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 4266559 - 4266696
Alignment:
| Q |
46 |
atgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggccccttaccttcattattaaaacaaactccacaaat |
145 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||| || | |||||||| || | |||||||| || |||| || ||||| |||| |||||||| |
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| T |
4266559 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa- |
4266657 |
T |
|
| Q |
146 |
tcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
|||| |||| |||||| ||||||| ||||||||||||| |
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| T |
4266658 |
--atcacttggcatctttaaattccaatctttggaaagaag |
4266696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 4586375 - 4586277
Alignment:
| Q |
46 |
atgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggccccttaccttcattattaaaacaaactccacaaa |
144 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| | | | |||||||||||| | |||||||| ||| | ||||| ||||| |||| |||||||| |
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| T |
4586375 |
atgaacttgagaaggatgtaataaatgttctctccactaagttcccttctatttatgccattggccctttatcatcatttttaaatcaaagtccacaaa |
4586277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 1281887 - 1281716
Alignment:
| Q |
15 |
agagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggcccct |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | |
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| T |
1281887 |
agagactctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctataattccttctgtttacccgattggccctt |
1281788 |
T |
|
| Q |
115 |
taccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1281787 |
taccttcattattaaaccaaactccacaaattcatcaattggattctttagattccaacctttggaaagaag |
1281716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 238 - 65
Alignment:
| Q |
14 |
cagagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctc-tcctccataattccttctatttatccgattggccc |
112 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||| |||| || |||||||| |
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| T |
238 |
cagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaataaccgctctcctcctctttgtttccttctctttaccccattggccc |
139 |
T |
|
| Q |
113 |
cttaccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |
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|
| T |
138 |
tttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaag |
65 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 1675001 - 1674828
Alignment:
| Q |
14 |
cagagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctc-tcctccataattccttctatttatccgattggccc |
112 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||| |||| || |||||||| |
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|
| T |
1675001 |
cagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaataaccgctctcctcctctttgtttccttctctttaccccattggccc |
1674902 |
T |
|
| Q |
113 |
cttaccttcattattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |
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|
| T |
1674901 |
tttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaag |
1674828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 20863215 - 20863268
Alignment:
| Q |
25 |
ctattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct |
78 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||||| || |||| ||||| |
|
|
| T |
20863215 |
ctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct |
20863268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 24103738 - 24103601
Alignment:
| Q |
46 |
atgaacttgagagtgatgtaataaatgctctctcctccataattccttctatttatccgattggccccttaccttcattattaaaacaaactccacaaat |
145 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||| || | |||||||| || | |||||||| || |||| || ||||| |||| |||||||| |
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| T |
24103738 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa- |
24103640 |
T |
|
| Q |
146 |
tcatcaattggactctttagattccaacctttggaaagaag |
186 |
Q |
| |
|
|||| |||| |||||| ||||||| ||||||||||||| |
|
|
| T |
24103639 |
--atcacttggcatctttaaattccaatctttggaaagaag |
24103601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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