View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_high_3 (Length: 427)
Name: NF12413_high_3
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_high_3 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 20125 - 20525
Alignment:
| Q |
18 |
tgtctaagaagttgttccaaaccaccacagtatatattctaaaatccaaactccacacaccttaacttttgtagcatcannnnnnnnnnnnnnnnggagt |
117 |
Q |
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| T |
20125 |
tgtctaagaagttgttccaaaccaccacagtctatattctaaaatccaaactccacacaccttaacttttgtagcatcatttttctttttcttttggagt |
20224 |
T |
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| Q |
118 |
tccaagcatctctcatttatgcgagacgagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaagg |
217 |
Q |
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| T |
20225 |
tccaagcatctctcatttatgcgagacgagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaagg |
20324 |
T |
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| Q |
218 |
aaaccaaaaaataactttccagattaagcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20325 |
aaaccaaaaaataactttccagattaagcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagca |
20424 |
T |
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| Q |
318 |
aacactgtctttctcaactcctttacaaactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcctcttcat |
417 |
Q |
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||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20425 |
aacaccgttttcctcaactcctttacaaactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcttcttcat |
20524 |
T |
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| Q |
418 |
c |
418 |
Q |
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| T |
20525 |
c |
20525 |
T |
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