View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_high_9 (Length: 259)
Name: NF12413_high_9
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 46094559 - 46094314
Alignment:
| Q |
1 |
atgcgattatgcttcctgcctttgttttcatcaagccatcattgatttccatatatccaaattcacacttttgtcttttatgatatgttccaagggtttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46094559 |
atgcgattatgcttcctgcctttgttttcatcaagccatcattgatttccatatatccaaattcacacttttgtcttttatgatatgctccaagggtttc |
46094460 |
T |
|
| Q |
101 |
ttgattccatggtttcattcactgttgcagccgttgtgccgttctcactattctaaaatccttatagttttggccgggattaaggttgggttgttagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46094459 |
ttgattccatggtttcattcactgttgcagccgttgtgccgttctcactattctaaaatccttatagttttggccgggattaaggttgggttgttagatg |
46094360 |
T |
|
| Q |
201 |
agtgtcattagttggaattgtcggggtttaggtagcccgagcacag |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46094359 |
agtgtcattagttggaattgtcggggtttaggtagcccgagcacag |
46094314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 8968771 - 8968725
Alignment:
| Q |
200 |
gagtgtcattagttggaattgtcggggtttaggtagcccgagcacag |
246 |
Q |
| |
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| T |
8968771 |
gagtgtcattagttggaaatgtcggagatcaggtagcccgagcacag |
8968725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 32953483 - 32953530
Alignment:
| Q |
198 |
atgagtgtcattagttggaattgtcggggtttaggtagcccgagcaca |
245 |
Q |
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| T |
32953483 |
atgagtgtcattagttggaattgtcgaggtttaggtagcccgagcaca |
32953530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 5605188 - 5605143
Alignment:
| Q |
196 |
agatgagtgtcattagttggaattgtcggggtttaggtagcccgag |
241 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
5605188 |
agatgagtgtcattagtttgaactgtcggggtttagggagcccgag |
5605143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 3966372 - 3966339
Alignment:
| Q |
213 |
tggaattgtcggggtttaggtagcccgagcacag |
246 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |
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| T |
3966372 |
tggaactgtcggggtttaggtagcccgagcacag |
3966339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 3209102 - 3209070
Alignment:
| Q |
213 |
tggaattgtcggggtttaggtagcccgagcaca |
245 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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|
| T |
3209102 |
tggaattgtcggggtataggtagcccgagcaca |
3209070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 9613577 - 9613544
Alignment:
| Q |
213 |
tggaattgtcggggtttaggtagcccgagcacag |
246 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |
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| T |
9613577 |
tggaactgtcggggtttaggtagcccgagcacag |
9613544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 2539622 - 2539654
Alignment:
| Q |
213 |
tggaattgtcggggtttaggtagcccgagcaca |
245 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
2539622 |
tggaactgtcggggtttaggtagcccgagcaca |
2539654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 16939917 - 16939869
Alignment:
| Q |
198 |
atgagtgtcattagttggaattgtcggggtttaggtagcccgagcacag |
246 |
Q |
| |
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|||||| |||| |||||||| ||| ||||||||||||||||||| |||| |
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| T |
16939917 |
atgagtttcatcagttggaactgtaggggtttaggtagcccgagtacag |
16939869 |
T |
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