View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12413_low_11 (Length: 293)

Name: NF12413_low_11
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12413_low_11
NF12413_low_11
[»] chr7 (5 HSPs)
chr7 (1-220)||(7977603-7977821)
chr7 (64-261)||(10614577-10614773)
chr7 (173-261)||(15092178-15092266)
chr7 (208-258)||(10170143-10170193)
chr7 (208-258)||(10177668-10177718)
[»] chr4 (27 HSPs)
chr4 (42-239)||(659717-659911)
chr4 (47-266)||(8186993-8187211)
chr4 (167-266)||(8184051-8184150)
chr4 (75-265)||(3438496-3438684)
chr4 (166-252)||(1548444-1548530)
chr4 (74-267)||(7225812-7226004)
chr4 (65-262)||(53761692-53761885)
chr4 (58-255)||(553469-553665)
chr4 (58-266)||(55908641-55908848)
chr4 (180-265)||(546893-546978)
chr4 (147-231)||(1519143-1519227)
chr4 (145-265)||(1537766-1537886)
chr4 (173-255)||(1524513-1524595)
chr4 (146-255)||(1513407-1513516)
chr4 (173-265)||(640895-640987)
chr4 (143-261)||(570335-570453)
chr4 (58-120)||(1600543-1600605)
chr4 (147-265)||(12121458-12121576)
chr4 (178-255)||(1508035-1508112)
chr4 (58-110)||(644964-645016)
chr4 (58-98)||(1495835-1495875)
chr4 (58-98)||(1517412-1517452)
chr4 (219-262)||(370903-370946)
chr4 (179-265)||(7307840-7307926)
chr4 (200-232)||(566202-566234)
chr4 (58-98)||(1533903-1533943)
chr4 (168-252)||(55505130-55505214)
[»] chr3 (6 HSPs)
chr3 (65-261)||(13470652-13470847)
chr3 (77-265)||(51764372-51764559)
chr3 (64-262)||(51113700-51113897)
chr3 (79-253)||(51120827-51121000)
chr3 (58-110)||(1657381-1657433)
chr3 (166-233)||(27005792-27005859)
[»] chr8 (8 HSPs)
chr8 (143-265)||(18315270-18315392)
chr8 (143-255)||(32151291-32151403)
chr8 (167-261)||(34936184-34936278)
chr8 (75-243)||(27922510-27922674)
chr8 (173-261)||(17628041-17628129)
chr8 (65-238)||(17636317-17636493)
chr8 (58-255)||(28246208-28246402)
chr8 (207-243)||(44736537-44736573)
[»] chr5 (6 HSPs)
chr5 (53-243)||(32267477-32267663)
chr5 (60-243)||(41901453-41901632)
chr5 (75-240)||(41889484-41889648)
chr5 (173-255)||(37937877-37937959)
chr5 (173-233)||(38267583-38267643)
chr5 (173-262)||(20478109-20478198)
[»] chr2 (3 HSPs)
chr2 (74-259)||(45245014-45245198)
chr2 (58-266)||(1037577-1037784)
chr2 (166-230)||(32785792-32785856)
[»] chr6 (18 HSPs)
chr6 (64-259)||(6402846-6403040)
chr6 (64-258)||(6432148-6432341)
chr6 (64-262)||(7131618-7131815)
chr6 (173-261)||(6423201-6423289)
chr6 (179-262)||(6585270-6585353)
chr6 (64-262)||(7119140-7119337)
chr6 (64-261)||(6415950-6416146)
chr6 (173-258)||(10579763-10579848)
chr6 (58-255)||(11936188-11936384)
chr6 (58-255)||(11948168-11948364)
chr6 (168-238)||(28935056-28935126)
chr6 (64-253)||(6394856-6395044)
chr6 (145-258)||(6409993-6410106)
chr6 (178-243)||(14802338-14802403)
chr6 (173-261)||(7994209-7994297)
chr6 (79-119)||(9411477-9411517)
chr6 (173-231)||(6589350-6589408)
chr6 (145-237)||(12102274-12102366)
[»] chr1 (7 HSPs)
chr1 (74-243)||(19468428-19468596)
chr1 (159-243)||(52082583-52082667)
chr1 (179-265)||(29658929-29659015)
chr1 (179-267)||(29718956-29719044)
chr1 (179-262)||(7554471-7554554)
chr1 (173-243)||(43634909-43634979)
chr1 (159-243)||(52092779-52092863)
[»] scaffold0295 (1 HSPs)
scaffold0295 (173-266)||(651-744)
[»] scaffold0041 (1 HSPs)
scaffold0041 (170-266)||(39163-39259)
[»] scaffold0807 (1 HSPs)
scaffold0807 (74-129)||(1393-1448)
[»] scaffold0014 (1 HSPs)
scaffold0014 (62-110)||(88950-88998)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7977821 - 7977603
Alignment:
Q  1 cctttgcttgaagaactcgacctaagtaacctcaaattgatagatggctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7977821 cctttgcttgaagaactcgacctaagtaacctcaaattgatagatggctatggcatttctgaagaaggtattggtcaagttttaaggagatgttgtaaca 7977722  T
Q  101 ttagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacag 200  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7977721 ttagacatttaaacctagcctgttgttcaagggtgaatcta-cgtggaatgaaattcgacgtttgcaaactcgaggctttgaacttgtcacatacaacag 7977623  T
Q  201 ttgatgataaaacactctat 220  Q
    ||||||||||||||||||||    
T  7977622 ttgatgataaaacactctat 7977603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 261
Target Start/End: Complemental strand, 10614773 - 10614577
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  ||||||||||||||| ||||||||| ||||| ||||| ||| |||||| ||||  ||  ||||  ||||  |||||||||  | |  |||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctact-tggaatgaacgttgttgtt 10614675  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
      ||| || |||| ||||||||||||| |||| |  ||| ||||||||||||||||||||||||| ||||  ||| |||| | |||||||||||||||    
T  10614674 cccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattact 10614577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 15092178 - 15092266
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
    |||| |||||| |||||| | ||||  ||| |||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||    
T  15092178 gaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattact 15092266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 10170143 - 10170193
Alignment:
Q  208 taaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatt 258  Q
    |||||||||||||||||||||||||  ||||||||| | |||| |||||||    
T  10170143 taaaacactctatgtgatctcaaagtattgttgtggacttttgaaactatt 10170193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 10177668 - 10177718
Alignment:
Q  208 taaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatt 258  Q
    |||||||||||||||||||||||||  ||||||||| | |||| |||||||    
T  10177668 taaaacactctatgtgatctcaaagtattgttgtggacttttgaaactatt 10177718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 659911 - 659717
Alignment:
Q  42 agatggctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtcta 141  Q
    ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| | ||  |||    
T  659911 agatggcaatggcatttctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagcta 659812  T
Q  142 ccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgtt 239  Q
     || | ||| || || ||||||  |||||| |||| ||||||||||||||||||||  ||| || || |||||  |||||||||||||| || |||||    
T  659811 -cgagtaataaattttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaaca--ctatgtgatctcaaggaattgtt 659717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 266
Target Start/End: Original strand, 8186993 - 8187211
Alignment:
Q  47 gctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtg 146  Q
    |||||| ||| ||||||||||||||  |||||||||| | |||||||||| | |||||  |||| ||| ||||||  ||| |||| ||  | ||  |  |    
T  8186993 gctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagcctactgtccaagagttgggctctcc-g 8187091  T
Q  147 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccc 246  Q
    ||||||| || ||| ||| |||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||  || ||||||||||||||||| |     
T  8187092 gaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggct 8187191  T
Q  247 tttgcaactattactggaaa 266  Q
    ||||||  | ||||||||||    
T  8187192 tttgcagttgttactggaaa 8187211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 8184051 - 8184150
Alignment:
Q  167 aaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaaa 266  Q
    ||||| |||| |||||||||||||||||||| ||||||||||| | |||||||||  |||||||||||||||||||| | |||| |||| ||||||||||    
T  8184051 aaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaa 8184150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 3438496 - 3438684
Alignment:
Q  75 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 174  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||  |||||| | | |||| | |   ||| |||||| || || ||||  ||| | ||    
T  3438496 tcaagttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgt-gtgcaatgaactttgatgtttcaaaattgga 3438594  T
Q  175 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
    ||  |||| |||||||||||||| |||||||||||||  |||| |||| |||||||||||||||||||| | ||||||||| |||||||||    
T  3438595 ggtattgagcttgtcacatacaagagttgatgataaat-actccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 3438684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 1548444 - 1548530
Alignment:
Q  166 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgca 252  Q
    |||||| |||| ||||||||||||||||||||   |||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  1548444 caaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 267
Target Start/End: Original strand, 7225812 - 7226004
Alignment:
Q  74 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 173  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| || |||  ||| |||| ||||  |||| |    ||||| || ||||||  | || | |    
T  7225812 gtcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctac-gcaacatgaactttgaagttctcgaattgg 7225910  T
Q  174 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaaag 267  Q
    |||  ||||||||||||||||||| ||||||||| |||  |||   |||||| ||||||||||||||||| | |||||||||||||||||||||    
T  7225911 aggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaag 7226004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 262
Target Start/End: Original strand, 53761692 - 53761885
Alignment:
Q  65 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagttt 164  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||| ||| |||||   |||||||| ||||  |||   ||||||||| || | ||||     
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagcta-attggaatgaactttgtagttc 53761790  T
Q  165 gcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
     ||| || ||||||||||||||||||  ||| | |||| | ||||||||||||  ||||||||| |||| |||| |||| | ||||||| ||||||||    
T  53761791 ccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttgcaa-tattactg 53761885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 553665 - 553469
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    |||||||||| | | | ||| |||||||||| ||||||||||||||||||||| ||| || || | |||||||| ||||   ||| ||  | |||| ||     
T  553665 tctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttac-gtacattgaacttt 553567  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
     |||||  |||||| |||| |||||||||||||  ||||| |||||||||| || ||||  ||||||| ||||||||||||| ||| | |||||||||    
T  553566 aaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaact 553469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 266
Target Start/End: Original strand, 55908641 - 55908848
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    ||||||||||||||  || ||||| ||||||||||||||||  |||||||||| ||  ||||||  |||||||| ||||  ||||  | |||| || ||     
T  55908641 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactact-tagaataaacttt 55908739  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactat 257  Q
     |||||    || | |||| ||| |||||||||||||||   ||||||||| ||||||||||| |||||||||||| ||||||||| | ||| ||||| |    
T  55908740 aaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgt 55908839  T
Q  258 tactggaaa 266  Q
    | |||||||    
T  55908840 ttctggaaa 55908848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 546978 - 546893
Alignment:
Q  180 tgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
    |||||||||||| |||||  ||  ||||| |||||||||||||||||||||||||||||||||| | |||| || | |||||||||    
T  546978 tgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaa 546893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  147 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaa 231  Q
    ||||||| || ||||||  |||||| |||| ||||||||||||||||||||  ||||||||  || |||||||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 1537766 - 1537886
Alignment:
Q  145 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggc 244  Q
    ||||||||| || ||||||  |||||| || | ||||||||||||| ||||||  ||| |||| |||||||| | ||| ||||||||| ||||| ||||     
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  245 cctttgcaactattactggaa 265  Q
    | ||||||||| |||||||||    
T  1537866 cttttgcaacttttactggaa 1537886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 1524513 - 1524595
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    |||| |||||| ||||||| |||||  ||||||||| ||||||||||| |||||||| |||||||| |||| | |||||||||    
T  1524513 gaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaact 1524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 1513407 - 1513516
Alignment:
Q  146 ggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggcc 245  Q
    |||||||| || ||||||  |||||| || | |||||||||||||  |||||  ||||||||| |||||||||| || ||||||||| ||||| |||| |    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  246 ctttgcaact 255  Q
     |||||||||    
T  1513507 ttttgcaact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 640987 - 640895
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
    |||| ||||||||||||| ||||||  ||||||||| |||||||||| |||| |||||||| |||  |||| | |||||| || |||||||||    
T  640987 gaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaa 640895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 570453 - 570335
Alignment:
Q  143 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 242  Q
    |||||| |||| || ||||||  ||||||||||| ||||||||||||| |||||  ||||||| |  ||  ||||||| |||| |||||||||||| | |    
T  570453 cgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcg 570354  T
Q  243 gccctttgcaactattact 261  Q
    | | ||||||||| |||||    
T  570353 ggcttttgcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 1600605 - 1600543
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcc 120  Q
    ||||||||||||||  |||||||||||||||||| || ||| ||||||||||| ||| |||||    
T  1600605 tctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcc 1600543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 12121458 - 12121576
Alignment:
Q  147 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccc 246  Q
    ||||||| || ||||||  |||||| || | ||||||||||||| ||||||  ||||||||| |||||||||  || ||||||||| ||||  |||| |     
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  247 tttgcaactattactggaa 265  Q
    ||||||||| | |||||||    
T  12121558 tttgcaactctcactggaa 12121576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 1508035 - 1508112
Alignment:
Q  178 gttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    |||||||||||||||||| |  ||||||||| ||||||| | ||| ||||||||| ||||| |||| | |||||||||    
T  1508035 gttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaact 1508112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 645016 - 644964
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 110  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  645016 tctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacattt 644964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 1495835 - 1495875
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 98  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  1495835 tctgaagaaggtattggtcatgttttaaggagatgttgtaa 1495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 1517412 - 1517452
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 98  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1517412 tctgaagaaggtatcgatcatgttttaaggagatgttgtaa 1517452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 370946 - 370903
Alignment:
Q  219 atgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  370946 atgtgatctcaaagagttgttgtcggcttttgcaactattactg 370903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 7307926 - 7307840
Alignment:
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
    |||||||||||| |||||  |||||||||| || ||||   | |||||||||||||||||||| | | |||||| || |||||||||    
T  7307926 ttgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttgcacctgttactggaa 7307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 566234 - 566202
Alignment:
Q  200 gttgatgataaaacactctatgtgatctcaaag 232  Q
    ||||||||| |||||||||||||||||||||||    
T  566234 gttgatgatgaaacactctatgtgatctcaaag 566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 1533903 - 1533943
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 98  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  1533903 tctgaagaaggtattagtcatgttttaaggagatgttgtaa 1533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 55505130 - 55505214
Alignment:
Q  168 aactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgca 252  Q
    |||| |||| ||||||||||||| ||||||  ||||| |||  |||||| ||||||| |||||||| |||| |||| | ||||||    
T  55505130 aactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgca 55505214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 13470652 - 13470847
Alignment:
Q  65 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagttt 164  Q
    |||||||  ||||||||||||||| ||||||||| ||||| ||||| ||| |||||| ||||  ||  ||||  ||||  ||||||||| || |  |||     
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctact-tggaatgaactttgttgttc 13470750  T
Q  165 gcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
     ||| || |||| ||||||||||||| ||||||  ||| ||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||    
T  13470751 ccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattact 13470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 51764372 - 51764559
Alignment:
Q  77 aagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgagg 176  Q
    |||||||||||||||||| ||| ||||| ||||| |||||| ||   |||||||| ||||  ||||  ||||||||| || | ||||   || || ||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctact-tggaatgaactttgcagttccgaagctggagg 51764470  T
Q  177 cgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
     |||  ||||||||  ||||| ||||||||||||||||||||||| ||||||||||| |||||| || | |||||||||||||||||||    
T  51764471 tgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 51113700 - 51113897
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  |||||||||||| |||||||||||| ||||| ||||| ||  |||| |  |||||||   |||  ||||  ||||||||| || |||| |    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctact-tggaatgaactttgaagct 51113798  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
      |||||| |||| |||  |||||||| ||||||  ||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| ||||||    
T  51113799 cccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactg 51113897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 51120827 - 51121000
Alignment:
Q  79 gttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcg 178  Q
    |||||| |||||||||||||||||||||| || ||| |  || |||||||||| ||||  || |  ||||||||| || ||||||  |||| | |||| |    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgca-tggaatgaactttgaagttctcaaattggaggtg 51120925  T
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaa 253  Q
    ||||||||||| ||||||| |||||||||| ||| ||| ||||| ||||||||||||||| |||| | |||||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 51121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 1657433 - 1657381
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 110  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  1657433 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 1657381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27005792 - 27005859
Alignment:
Q  166 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaaga 233  Q
    |||||| ||||  ||||||||||||||||||| | ||||| ||| |||||| ||||| ||||||||||    
T  27005792 caaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 18315270 - 18315392
Alignment:
Q  143 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 242  Q
    ||||||||||| ||  |||||  |||||| |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||     
T  18315270 cgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgta 18315369  T
Q  243 gccctttgcaactattactggaa 265  Q
    | | ||||||||| ||| |||||    
T  18315370 ggcttttgcaactgttattggaa 18315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 32151403 - 32151291
Alignment:
Q  143 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtg 242  Q
    ||||||||||| |||||||||| ||| || |||| ||| |||||||||  |||||   |||||||| ||||||||||||||||||||||||||||| |||    
T  32151403 cgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtg 32151304  T
Q  243 gccctttgcaact 255  Q
    | | |||||||||    
T  32151303 ggcttttgcaact 32151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 34936184 - 34936278
Alignment:
Q  167 aaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
    ||||| |||| |||| |||||||| |||||| |||||||||||||||||||||||  ||| ||||||||||| |||| | |||||||||||||||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattact 34936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 27922674 - 27922510
Alignment:
Q  75 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 174  Q
    |||||||||| ||| ||| ||||||||||||||||| ||| || ||   ||||||| |||||  |||    | |||||| || ||||||  |||| | ||    
T  27922674 tcaagttttagggatatgctgtaacattagacatttgaacttatccaagtgttcaatggtgaaacta----gaaatgaactttgaagttcccaaattgga 27922579  T
Q  175 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    || ||||||||||||| ||||||  ||||||||| || |||| ||| ||||||||||||||||||||||    
T  27922578 ggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgg 27922510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 17628041 - 17628129
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
    |||| |||||||||||||||||| | ||||||||||||| |||||  |||||||||||||| ||||| ||| |  ||| ||||||||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctcttgaaactattact 17628129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 17636317 - 17636493
Alignment:
Q  65 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctac--cg-tggaatgaaattcgaag 161  Q
    |||||||  |||||||||||||| |||||| ||| ||||| ||||| ||| ||| | | |||||||| ||||  ||||  || | ||||||| || ||||    
T  17636317 aaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaag 17636416  T
Q  162 tttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgt 238  Q
    ||  |||| | |||| ||||||||||||||| |||  |||||| ||| || || | |||||||||||||||||||||    
T  17636417 ttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 28246208 - 28246402
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  ||||||||||  |||  ||| | |  | |||| ||     
T  28246208 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagcta-catacattgaacttt 28246306  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| ||||||  ||||| ||||||||  |||||||||||||||| | || | |||||||||    
T  28246307 gaagttcccaaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgcaact 28246402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 44736573 - 44736537
Alignment:
Q  207 ataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    |||||||||||  ||||||||||||||||||||||||    
T  44736573 ataaaacactcattgtgatctcaaagagttgttgtgg 44736537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 32267663 - 32267477
Alignment:
Q  53 gcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatga 152  Q
    |||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||| || ||   |||||||  ||||  |||    | |||||    
T  32267663 gcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaacta----gaaatga 32267568  T
Q  153 aattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    | || ||||||  |||| | ||||  |||||||||||||| |||| |||||||||| || |||| ||| ||||||||||||||||||||||    
T  32267567 actttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 32267477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 41901453 - 41901632
Alignment:
Q  60 tgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcga 159  Q
    |||||||||||| | ||||||||||||||  |||||||||||||||||||| ||| || ||   ||||| |  ||||| |||    | |||  | || ||    
T  41901453 tgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacatttgaacttatccaagtgttccatagtgagacta----gaaatagactttga 41901548  T
Q  160 agtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    ||||  |||||| |||| ||||||||||||| |||||| |||||||||| || |||| ||| ||||||||||||||||||||||    
T  41901549 agttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 41889484 - 41889648
Alignment:
Q  75 tcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcga 174  Q
    |||||||||||||| |||||||||||||||| |||| ||| || || | |||||||  ||||  ||||  || |||||| ||  |||||  |||| | ||    
T  41889484 tcaagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctact-tgaaatgaactttaaagttcccaaattgga 41889582  T
Q  175 ggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttg 240  Q
    || ||||||||| ||| |||||| |||||||||| ||||||| |||  ||||||||||||||||||    
T  41889583 ggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 37937959 - 37937877
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    |||| |||| ||||| ||||||||| | |||||||| ||||||||||||| ||||||||||  ||| |||| | |||||||||    
T  37937959 gaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgcaact 37937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 38267583 - 38267643
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaaga 233  Q
    |||| |||| ||||| ||||||||| |||||||||| | ||||||||||| ||||||||||    
T  38267583 gaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaaga 38267643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 20478109 - 20478198
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
    |||| ||||||||||||| ||||||  ||||||||  ||||| | | ||||||||||| || ||||||||| | ||||||| || |||||    
T  20478109 gaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaaatactactg 20478198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 45245014 - 45245198
Alignment:
Q  74 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 173  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||  || ||||||||  ||    ||| ||||||| || || ||||||   ||||| |    
T  45245014 gtcatgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattac-gtggaataaactttgaagttccaaaacttg 45245112  T
Q  174 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatta 259  Q
    ||| |||||| |||||| | ||||  ||||||||| |||||||| |||||||||||||||||||| |||| | |||||||||||||    
T  45245113 aggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactatta 45245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 266
Target Start/End: Original strand, 1037577 - 1037784
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    ||||||||||||||  || ||||||||||||||||||||||  |||||||||| ||  ||||||  | |||||| ||||  ||||  | |||| || ||     
T  1037577 tctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactact-tagaataaacttt 1037675  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactat 257  Q
     |||||    || | |||| ||| |||||||||||||||   ||||||||| ||||||||||| |||||||||||| ||||||||| | ||| ||||| |    
T  1037676 aaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgt 1037775  T
Q  258 tactggaaa 266  Q
    | |||||||    
T  1037776 ttctggaaa 1037784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 32785792 - 32785856
Alignment:
Q  166 caaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaa 230  Q
    |||||| |||| |||||||||||||||||||| | |||||||| || |||| |||||||||||||    
T  32785792 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 259
Target Start/End: Complemental strand, 6403040 - 6402846
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||| ||| || |  | |||||||| ||||  ||||  |||||| || || | ||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctact-tggaataaactttgcagtt 6402942  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatta 259  Q
      | |||| || | ||||||||||||| |||| |  ||||||||| |||||||||||||||||||||||| |||| |||| | |||| ||||||||    
T  6402941 ccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactatta 6402846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 6432341 - 6432148
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  |||||||||||||||||||||||||  ||| |||||| ||| |||||| ||||  ||  ||||  ||||  ||||||||| || ||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctaca-tggaatgaactttgaagtt 6432243  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatt 258  Q
      ||| ||  ||| ||||||||||||| ||||||  ||||||||| ||||||| |||||||||| ||||| ||||||||| | | ||||||||||    
T  6432242 cccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactatt 6432148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 262
Target Start/End: Complemental strand, 7131815 - 7131618
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  ||||||||||||||||||||| ||| |||| |||||| ||| |||||   |||||||| ||||  ||||  ||||||||| || |  |||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctact-tggaatgaactttgttgtt 7131717  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
     || | || |||| ||||||||||||| |||| |  ||||||||| |||||||| |||||||||| |||| |||||| || | |||| |||||||||||    
T  7131716 cgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactg 7131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 6423289 - 6423201
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
    |||| ||||||||||||| |||||| ||||   |||||||||||||||| |||||||||||||||||||||   |||||||||||||||    
T  6423289 gaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactattact 6423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 6585270 - 6585353
Alignment:
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||| ||  | |||| |||||||||||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactg 6585353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 262
Target Start/End: Complemental strand, 7119337 - 7119140
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  ||||||||||||||||||||| ||| |||| |||||| ||| |||||   |||||||| ||||  ||||  ||||||||| || |  |||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctact-tggaatgaactttgttgtt 7119239  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
      | | || |||| ||||||||||||| |||| |  ||||||||| |||||||| |||||||||| |||| |||||| || | |||| |||||||||||    
T  7119238 caccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactg 7119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 261
Target Start/End: Complemental strand, 6416146 - 6415950
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  |||||||||||| || ||||||||| ||| | ||||| ||| |||||| ||||  ||  ||||  ||||  ||||||| | || | ||||    
T  6416146 gaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctaca-tggaatggactttgtagtt 6416048  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
      ||| || |||| ||||||||||||| ||||||  ||| |||||||||| ||||||||||||||||||| |||| | || | |||||||||||||||    
T  6416047 cccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattact 6415950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 10579763 - 10579848
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactatt 258  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||| ||||||| | | |||| |||||||    
T  10579763 gaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaactatt 10579848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 11936188 - 11936384
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  | ||||||||  |||  |||| ||  | |||| ||     
T  11936188 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctac-gtacattgaacttt 11936286  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| |||||| |||||| ||||||||  |||||||||||||||| |||| | |||||||||    
T  11936287 gaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaact 11936384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 11948168 - 11948364
Alignment:
Q  58 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattc 157  Q
    |||||||||||||| | ||| ||||||| || ||||||||||||||||||||| ||  || |  | ||||||||  |||  |||| ||  | |||| ||     
T  11948168 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctac-gtacattgaacttt 11948266  T
Q  158 gaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaact 255  Q
    ||||||  |||||| |||| |||| ||||||||  ||||| |||||| |||||| ||||||||  |||||||||||||||| |||| | |||||||||    
T  11948267 gaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaact 11948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 28935126 - 28935056
Alignment:
Q  168 aactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgt 238  Q
    ||||||||| |||||||||||||||||||| |||||| ||| || |||||  |||||| ||||||||||||    
T  28935126 aactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 28935056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 253
Target Start/End: Complemental strand, 6395044 - 6394856
Alignment:
Q  64 gaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtt 163  Q
    ||||||||  |||||||||||| || |||||||||  ||| |||||| ||| |||| |  |||||||  ||||  ||||  ||||||||| || | ||||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactaca-tggaatgaactttgcagtt 6394946  T
Q  164 tgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaa 253  Q
      | | || |||| ||||||||||||| ||||||  ||||||||| |||| || | |||||||||||||| ||||||||| | |||||||    
T  6394945 cccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 6394856  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 6410106 - 6409993
Alignment:
Q  145 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggc 244  Q
    ||||||||| || ||||||  ||| ||  ||| |||||||| |||| ||||||  ||||||||| |||| || |||||||||||||||| ||||||| |     
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  245 cctttgcaactatt 258  Q
    | ||||||||||||    
T  6410006 cttttgcaactatt 6409993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 14802403 - 14802338
Alignment:
Q  178 gttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    |||||| |||||| ||||||  ||||||||| |||||||||||||||| ||||||| |||||||||    
T  14802403 gttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 7994209 - 7994297
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattact 261  Q
    |||| ||||||| ||||| ||||||  ||| ||||  ||||||| |||||||||||||||| ||||| ||| | |||||||||||||||    
T  7994209 gaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattact 7994297  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 9411517 - 9411477
Alignment:
Q  79 gttttaaggagatgttgtaacattagacatttaaacctagc 119  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  9411517 gttttaaggagatgtggtaacattagacatttgaacctagc 9411477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 6589350 - 6589408
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaa 231  Q
    |||| ||||||||||||| ||||||  ||| ||||||||||||| ||| ||||||||||    
T  6589350 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 12102366 - 12102274
Alignment:
Q  145 tggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttg 237  Q
    |||| |||| || ||||||  |||||| |||| |||||||||||||||||||  ||||||| |  ||  ||||||| |||| |||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 19468428 - 19468596
Alignment:
Q  74 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcg 173  Q
    |||||||||||||||| |||| ||| ||||| ||||||||| |||||   |||||||| |||| |||||  |||| |||| || | ||||  ||| || |    
T  19468428 gtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctact-tggagtgaactttgtagttcccaagctgg 19468526  T
Q  174 aggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    ||| |||||| |||||| ||||||  ||||||||| ||||||| ||||||||||||||||  ||||||||    
T  19468527 aggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtgg 19468596  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 52082667 - 52082583
Alignment:
Q  159 aagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    |||||| |||| | |||| ||||||||||||| | |||| | |||||||| ||||| | ||||||||||||||||||||||||||    
T  52082667 aagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 52082583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 29658929 - 29659015
Alignment:
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaa 265  Q
    |||||||||||| |||| | ||||||||||||| ||||| || | || |||| |||||||||||||| ||||||| | |||||||||    
T  29658929 ttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaa 29659015  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 29718956 - 29719044
Alignment:
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaaag 267  Q
    |||||||||||| |||| |  |||||||||||| ||||| || | || |||| |||||||||||||| ||||||| | |||||||||||    
T  29718956 ttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaag 29719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 7554554 - 7554471
Alignment:
Q  179 ttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactg 262  Q
    |||||||| ||| ||||||  ||||||||| || |||||||| ||||||||||||||||| |||| | ||| ||||| ||||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactg 7554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 43634979 - 43634909
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    |||||||||||||||||| ||||||  ||||| |||  |||||| ||||||| |||||||| |||| ||||    
T  43634979 gaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtgg 43634909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 52092863 - 52092779
Alignment:
Q  159 aagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtgg 243  Q
    |||||| |||| | |||| |||||||||| || | |||| | |||||||| | ||| | ||||||||||||||||||| ||||||    
T  52092863 aagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgg 52092779  T

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Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 651 - 744
Alignment:
Q  173 gaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaaa 266  Q
    |||| ||| ||||||||||||||||  || |||||| ||||||||||| ||||||| |||| ||||||||| |  || ||||| ||||||||||    
T  651 gaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaa 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 39259 - 39163
Alignment:
Q  170 ctcgaggcgttgaacttgtcacatacaacagttgatgataaaacactctatgtgatctcaaagagttgttgtggccctttgcaactattactggaaa 266  Q
    ||||||| |||||||||| ||  |||||  ||| ||||| ||||||| ||||||||||||||||||||| |||| | |||||| ||  |||||||||    
T  39259 ctcgaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaa 39163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1393 - 1448
Alignment:
Q  74 gtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttca 129  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||||    
T  1393 gtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttca 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 88998 - 88950
Alignment:
Q  62 aagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 110  Q
    |||||||||| | |||  ||||||||||||||||||| |||||||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacattt 88950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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