View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_low_13 (Length: 249)
Name: NF12413_low_13
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8935168 - 8935384
Alignment:
| Q |
18 |
attgtaagccaccggattaaaaagttggatggaatgtgttaaaaagttaaaacatttagtattttgatcaaacaaagtgtgtagaattaaagaagtta-- |
115 |
Q |
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| T |
8935168 |
attgtaagccaccggattaaaaagttggatggaatgtgttaaaaagttaaaacatttagtatttg----aaacaaagtgtgtagaattaaagaagttata |
8935263 |
T |
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| Q |
116 |
gaggaaacatttctccttaccttcgacaaacattcgcagcttcgatggaggtcctgaatctcctaaaatttaaataaagaagttagccgacttaactctc |
215 |
Q |
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| T |
8935264 |
gaggaaacatttctccttaccttcgacaaacattcgcagcttcgatggaggtcctaaatctcctaaaatttaaataaagaagttagccgacttaactctc |
8935363 |
T |
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| Q |
216 |
aaagttggtatgtgtgcacag |
236 |
Q |
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| T |
8935364 |
aaagttggtatgtgtgcacag |
8935384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 8923689 - 8923796
Alignment:
| Q |
102 |
aattaaagaagttagaggaaacatttctccttaccttcgacaaacattcgcagcttcgatggaggtcctgaatctcctaaaatttaaataaagaagttag |
201 |
Q |
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| T |
8923689 |
aattaaagaagttagaggaaaattttctccttaccttcgacaaacattcgcagcttggatggag---------ttcctaaaattgaaataaagaagttag |
8923779 |
T |
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| Q |
202 |
ccgacttaactctcaaag |
219 |
Q |
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| T |
8923780 |
-cgacttaactctcaaag |
8923796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 8958657 - 8958721
Alignment:
| Q |
106 |
aaagaagttagaggaaacatttctccttaccttcgacaaacattcgcagcttcgatggaggtcct |
170 |
Q |
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| T |
8958657 |
aaagaagttagaggacaaatttctccttaccttcaacaaacattcgcagcttggatggagttcct |
8958721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 8944656 - 8944709
Alignment:
| Q |
117 |
aggaaacatttctccttaccttcgacaaacattcgcagcttcgatggaggtcct |
170 |
Q |
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| T |
8944656 |
aggaaaaaattctacttaccttcgacaaacattcgcagctttgacggagatcct |
8944709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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