View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_low_16 (Length: 222)
Name: NF12413_low_16
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 5351184 - 5350992
Alignment:
| Q |
11 |
gagaagcagagatagcaacaaccttaattgctccagccatgttacttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaat |
110 |
Q |
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| T |
5351184 |
gagaaccagagatagcaacaaccttaattgctccagccatgttatttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaat |
5351085 |
T |
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| Q |
111 |
cgagttgtgatttggaagagaagggaatgggtatttatacaaatataaatgcaaatgaatggtacggttgaaataattaatgtatatttagat |
203 |
Q |
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| T |
5351084 |
cgagttgtgatttggaagagaagggaatgggtatttatacaaatataaatgcaaatgaatggtacggttgaaataattaatgtatatttagat |
5350992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 5343504 - 5343417
Alignment:
| Q |
29 |
caaccttaattgctccagccatgttacttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaatcgagttgtgattt |
123 |
Q |
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| T |
5343504 |
caaccttaattatcccagccatgttttttgtgaatcaatgtggcaaatgttgt-------atatgtgatgtgatttgtgaattgagttgtgattt |
5343417 |
T |
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