View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_low_17 (Length: 216)
Name: NF12413_low_17
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 49903981 - 49904168
Alignment:
| Q |
17 |
accttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatc |
116 |
Q |
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| T |
49903981 |
accttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatc |
49904080 |
T |
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| Q |
117 |
tccacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccac |
204 |
Q |
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| T |
49904081 |
tccacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccac |
49904168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 49563405 - 49563263
Alignment:
| Q |
61 |
gattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttcaaca |
160 |
Q |
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| T |
49563405 |
gattcagatcaaccatctttcacagtttcctacctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgacttcgtttcaaca |
49563306 |
T |
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| Q |
161 |
ctcccgacaaacccgattccgttatcgcctttttcaaaaccca |
203 |
Q |
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| T |
49563305 |
ccccggataaacccgatactgttattgcctttttcaaaaccca |
49563263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 49559126 - 49559055
Alignment:
| Q |
133 |
aaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccac |
204 |
Q |
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| T |
49559126 |
aaagcatccaaacaacttcgtttaaacacccctcacaaagccgattcggttatctcctttttcaaaacccac |
49559055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 41483739 - 41483645
Alignment:
| Q |
91 |
tacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttat |
185 |
Q |
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| T |
41483739 |
tacctcactaacacttgtggtttatcaccacaagaagctcttaaagcatccaaatgacttggtttcaacacacccgacaatcccgactctgttat |
41483645 |
T |
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