View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_low_5 (Length: 415)
Name: NF12413_low_5
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 3021121 - 3021523
Alignment:
| Q |
1 |
gcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcccaaca |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3021121 |
gcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcctaaca |
3021220 |
T |
|
| Q |
101 |
atatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
3021221 |
atatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaa |
3021320 |
T |
|
| Q |
201 |
ggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggct |
300 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
3021321 |
aggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcgatggaggct |
3021420 |
T |
|
| Q |
301 |
gctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagcac |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021421 |
gctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagcac |
3021517 |
T |
|
| Q |
401 |
aggttc |
406 |
Q |
| |
|
|||||| |
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|
| T |
3021518 |
aggttc |
3021523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 3037990 - 3038392
Alignment:
| Q |
1 |
gcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcccaaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3037990 |
gcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcctaaca |
3038089 |
T |
|
| Q |
101 |
atatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
3038090 |
atatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaa |
3038189 |
T |
|
| Q |
201 |
ggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggct |
300 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
3038190 |
aggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcgatggaggct |
3038289 |
T |
|
| Q |
301 |
gctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagcac |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3038290 |
gctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgctagaagcac |
3038386 |
T |
|
| Q |
401 |
aggttc |
406 |
Q |
| |
|
|||||| |
|
|
| T |
3038387 |
aggttc |
3038392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 3030335 - 3030637
Alignment:
| Q |
1 |
gcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcccaaca |
100 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| || | |
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|
| T |
3030335 |
gcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaata |
3030434 |
T |
|
| Q |
101 |
atatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaa |
200 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
3030435 |
ttaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaa |
3030534 |
T |
|
| Q |
201 |
ggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcgatggaggct |
300 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| || |||||||||||| |
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| T |
3030535 |
aggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatgcggtggagataaggagagctgcgatggaggct |
3030634 |
T |
|
| Q |
301 |
gct |
303 |
Q |
| |
|
||| |
|
|
| T |
3030635 |
gct |
3030637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
127 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
|
| Q |
227 |
ctgactctgcatggcggtt |
245 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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