View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12413_low_6 (Length: 392)
Name: NF12413_low_6
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_6 |
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| [»] scaffold1235 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 25817013 - 25817379
Alignment:
| Q |
9 |
agaagcagagatggaatccacaaaccaaaacaaccatacattggaatggtacaaggctgcacagatgacaaggaacccgaaagtgctagtgaagctcttg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25817013 |
agaagcaaagatggaatccacaaaccaaaacaaccatacattggaatggtacaaggctgcacagatgacaaggaacccgaaagtgctagtgaagctcttg |
25817112 |
T |
|
| Q |
109 |
caagacctgagtggaagcaagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaagatcgcatcat |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25817113 |
caagacctgagtggaagcaagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaagatcgcatcat |
25817212 |
T |
|
| Q |
209 |
tgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25817213 |
tgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggt |
25817312 |
T |
|
| Q |
309 |
ctagattttgaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattatccttgctattg |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25817313 |
ctagattttgaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattatccttgctattg |
25817379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 387
Target Start/End: Original strand, 2307393 - 2307653
Alignment:
| Q |
127 |
aagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaagatcgcatcattgattcaaaatgggtgtt |
226 |
Q |
| |
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|||||||||| |||||| ||| |||||||| ||| |||||||| || | ||||||| ||| || ||||| |||||||||||||| ||| | | |
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| T |
2307393 |
aagcaatggatgcagaatacaaggctctaatgaacaacaaaacatgggcattggtaccatttcatggacaagaaaatatcattgattcaaagtggatcta |
2307492 |
T |
|
| Q |
227 |
caaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagattttgaagaaacc |
326 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || |||||||| ||| | ||||| ||||| | ||||||||||||||| | |||| ||| ||||| |
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|
| T |
2307493 |
caaaacaaaatacaaggcagatggcacaattgagaggaggaaagcgagacttgttgctagaggttttcaacaaacagctggattggattatgatgaaaca |
2307592 |
T |
|
| Q |
327 |
tttagtcctgttgtcaaggcaagtacagtgagaattatccttgctattgatgtccatctca |
387 |
Q |
| |
|
||||| || |||||||| ||||| || || ||||| || || |||||| ||| ||||||| |
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|
| T |
2307593 |
tttagcccagttgtcaaagcaagcactgtaagaatcattctatctattgttgtacatctca |
2307653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 387
Target Start/End: Original strand, 2312587 - 2312847
Alignment:
| Q |
127 |
aagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaagatcgcatcattgattcaaaatgggtgtt |
226 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| ||| |||||||| || | ||||||| ||| || ||||| |||||||||||||| ||| | | |
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|
| T |
2312587 |
aagcaatggatgcagaatacaaggctctaatgaacaacaaaacatgggcattggtaccatttcatggacaagaaaatatcattgattcaaagtggatcta |
2312686 |
T |
|
| Q |
227 |
caaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagattttgaagaaacc |
326 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || |||||||| ||| | ||||| ||||| | ||||||||||||||| | |||| ||| ||||| |
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|
| T |
2312687 |
caaaacaaaatacaaggcagatggcacaattgagaggaggaaagcgagacttgttgctagaggttttcaacaaacagctggattggattatgatgaaaca |
2312786 |
T |
|
| Q |
327 |
tttagtcctgttgtcaaggcaagtacagtgagaattatccttgctattgatgtccatctca |
387 |
Q |
| |
|
||||| || |||||||| ||||| || || ||||| || || |||||| ||| ||||||| |
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|
| T |
2312787 |
tttagcccagttgtcaaagcaagcactgtaagaatcattctatctattgttgtacatctca |
2312847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 29458892 - 29458657
Alignment:
| Q |
99 |
gaagctcttgcaagacctgagtggaagcaagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaag |
198 |
Q |
| |
|
||||||||||| | | ||||||||||| |||| |||||||||||||| | || || || || || |||||||||| ||||| || ||||||| |||| |
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|
| T |
29458892 |
gaagctcttgctaaatctgagtggaagaaagctatggactcagaatttagggcactgatgtcaaatcaaacatggattctagtgccgaatcaaggtcaag |
29458793 |
T |
|
| Q |
199 |
atcgcatcattgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaaca |
298 |
Q |
| |
|
| ||| |||||||| ||||||||||||||||| || | ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| | |||||| |
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|
| T |
29458792 |
aaaacataattgattcgaaatgggtgttcaaaactaagtacaaggcagatgggtcaatcgaaagaagaaaagcaaggttagtggcaagaggttttcaaca |
29458693 |
T |
|
| Q |
299 |
aacagctggtctagattttgaagaaacctttagtcc |
334 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||| |
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|
| T |
29458692 |
aacagctggcttagattttgaagaaacattcagtcc |
29458657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 8321489 - 8321354
Alignment:
| Q |
208 |
ttgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctgg |
307 |
Q |
| |
|
|||| ||||||||||| ||||| || |||| ||| ||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| |
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|
| T |
8321489 |
ttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctgg |
8321390 |
T |
|
| Q |
308 |
tctagattttgaagaaacctttagtcctgttgtcaa |
343 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||| |
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|
| T |
8321389 |
aatcgactatgaagaaacatttagtcctgtagtcaa |
8321354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 364
Target Start/End: Complemental strand, 29222060 - 29221861
Alignment:
| Q |
165 |
caaacatggacactagtaccatatcaaggccaagatcgcatcattgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaa |
264 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||| ||||||||| || || ||||| ||||| || || | || ||||||||||| |||||||||| |
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|
| T |
29222060 |
caaacttggacattagtaccatatcaagaccaagaaaacatcattgactccaagtgggttttcaagaccaagtacaaagcagatggctcgattgaaagaa |
29221961 |
T |
|
| Q |
265 |
ggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagattttgaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattat |
364 |
Q |
| |
|
| ||||||||| | ||||| | ||||| ||||||||| |||| |||||| |||||||| ||||||||| ||| ||||||| || ||| | |||||||| |
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|
| T |
29221960 |
gaaaagcaagactggttgcgaaaggattccaacaaacaactgggttagattatgaagaaagctttagtccggttttcaaggccagcacaatcagaattat |
29221861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 364
Target Start/End: Complemental strand, 29335359 - 29335160
Alignment:
| Q |
165 |
caaacatggacactagtaccatatcaaggccaagatcgcatcattgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaa |
264 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||| ||||||||| || || ||||| ||||| || || | || ||||||||||| |||||||||| |
|
|
| T |
29335359 |
caaacttggacattagtaccatatcaagaccaagaaaacatcattgactccaagtgggttttcaagaccaagtacaaagcagatggctcgattgaaagaa |
29335260 |
T |
|
| Q |
265 |
ggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagattttgaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattat |
364 |
Q |
| |
|
| ||||||||| | ||||| | ||||| ||||||||| |||| |||||| |||||||| ||||||||| ||| ||||||| || ||| | |||||||| |
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|
| T |
29335259 |
gaaaagcaagactggttgcgaaaggattccaacaaacaactgggttagattatgaagaaagctttagtccggttttcaaggccagcacaatcagaattat |
29335160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 368
Target Start/End: Original strand, 22993477 - 22993637
Alignment:
| Q |
208 |
ttgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctgg |
307 |
Q |
| |
|
|||| ||||||||||| ||||| || |||| ||| ||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| |
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|
| T |
22993477 |
ttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctgg |
22993576 |
T |
|
| Q |
308 |
tctagattttgaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattatcctt |
368 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||| || || ||||| ||| | |||||| |
|
|
| T |
22993577 |
aatcgactatgaagaaacatttagtcctgtagtcaaagctagcacagtcagagtcatcctt |
22993637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 29737829 - 29737694
Alignment:
| Q |
208 |
ttgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctgg |
307 |
Q |
| |
|
|||| ||||||||||| ||||| || |||| ||| ||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| |
|
|
| T |
29737829 |
ttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctgg |
29737730 |
T |
|
| Q |
308 |
tctagattttgaagaaacctttagtcctgttgtcaa |
343 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||| |
|
|
| T |
29737729 |
aatcgactatgaagaaacatttagtcctgtagtcaa |
29737694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 343
Target Start/End: Original strand, 492419 - 492554
Alignment:
| Q |
208 |
ttgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctgg |
307 |
Q |
| |
|
|||| ||||||||||| ||||| || |||| ||| ||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| |
|
|
| T |
492419 |
ttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctgg |
492518 |
T |
|
| Q |
308 |
tctagattttgaagaaacctttagtcctgttgtcaa |
343 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||| |
|
|
| T |
492519 |
aatcgactatgaagaaacatttagtcctgtagtcaa |
492554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 20601756 - 20601829
Alignment:
| Q |
240 |
aaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggtctaga |
313 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| | ||| | |||||||| || |||||||| |
|
|
| T |
20601756 |
aaggtagatggctcaattgaaagaagaaaagcaagattagttgccaaaggttttcaacaaaatgcaggtctaga |
20601829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1235 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1235
Description:
Target: scaffold1235; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 343
Target Start/End: Original strand, 894 - 1029
Alignment:
| Q |
208 |
ttgattcaaaatgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctgg |
307 |
Q |
| |
|
|||| |||||||| || ||||| || |||| ||| ||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| |
|
|
| T |
894 |
ttgactcaaaatgagtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctgg |
993 |
T |
|
| Q |
308 |
tctagattttgaagaaacctttagtcctgttgtcaa |
343 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||| |
|
|
| T |
994 |
aatcgactatgaagaaacatttagtcctgtagtcaa |
1029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 28401448 - 28401547
Alignment:
| Q |
244 |
cagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagattttgaagaaacctttagtcctgttgtcaa |
343 |
Q |
| |
|
||||||| || || ||||| |||||||| ||| ||||||||| || | ||||||||||||||| | || | ||||||||| ||||||||||| ||||| |
|
|
| T |
28401448 |
cagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttcaacaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaa |
28401547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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