View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12413_low_8 (Length: 312)
Name: NF12413_low_8
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 2592726 - 2592554
Alignment:
| Q |
15 |
acctgtggttcttgtataaaagagacacaaatgttgaaaaggtaaacccattatt-atcattcaagaaaaaaccaccactttgtacagtcaaataccaaa |
113 |
Q |
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| T |
2592726 |
acctgtggttgttgtataaaagagacacaaatgttgaaaaggcaaacccattatttatcattcaagaaaaaaccagcactttgtacagtcaaataccaaa |
2592627 |
T |
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| Q |
114 |
tgatccaatacatcttttgtatgcaagtatcttcaaaatcaaataacctttccttctacaggtttcaatcgcc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592626 |
tgatccaatacatcttttgtatgcaagtatcttcaaaatcaaataacctttccttctacaggtttcaatcgcc |
2592554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 2592527 - 2592477
Alignment:
| Q |
213 |
cctcttccatgtcaaaacactcaacaaaacacttcaagcctcgttatacat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592527 |
cctcttccatgtcaaaacactcaacaaaacacttcaagcctcgttatacat |
2592477 |
T |
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