View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12413_low_9 (Length: 307)
Name: NF12413_low_9
Description: NF12413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12413_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 34878839 - 34879129
Alignment:
| Q |
1 |
gaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34878839 |
gaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggat |
34878938 |
T |
|
| Q |
101 |
ctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaaccatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
34878939 |
ctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaaccggagctgttgttctaacaatat |
34879038 |
T |
|
| Q |
201 |
gtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879039 |
gtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatct |
34879129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 41810621 - 41810571
Alignment:
| Q |
123 |
taccaaacattgtgtttttcgctatttgcattttcgtatctttattatttt |
173 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| |||||||||| |||| |
|
|
| T |
41810621 |
taccaaacattgtgtgtttctctgtttgcattttcatatctttattctttt |
41810571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 26492831 - 26492771
Alignment:
| Q |
134 |
gtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaa |
194 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||| |||| |||| ||| ||||| ||||| |
|
|
| T |
26492831 |
gtgtgtttctctattagcattttcgtatctttattcttttgaacttgagttgttgatctaa |
26492771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University